STRINGSTRING
ppie ppie syf2 syf2 lsm6 lsm6 Snu13 Snu13 magoh magoh LOC103390422 LOC103390422 LOC103389252 LOC103389252 snrpb2 snrpb2 prpf38a prpf38a LOC103385776 LOC103385776 ppil1 ppil1 sart1 sart1 SRSF3 SRSF3 prpf3 prpf3 lsm2 lsm2 sf3b5 sf3b5 LOC103391595 LOC103391595 ctnnbl1 ctnnbl1 LOC103381207 LOC103381207 sf3b1 sf3b1 DHX15 DHX15 ccdc12 ccdc12 snrpf snrpf aqr aqr bcas2 bcas2 rbmx rbmx prpf18 prpf18 LOC103388515 LOC103388515 crnkl1 crnkl1 bud31 bud31 Srsf7 Srsf7 zmat2 zmat2 LOC103390531 LOC103390531 LOC103379185 LOC103379185 LOC103385130 LOC103385130 prpf8 prpf8 DDX5 DDX5 ENSCSEP00000012532 ENSCSEP00000012532 srsf5 srsf5 dhx38 dhx38 ENSCSEP00000013604 ENSCSEP00000013604 LOC103381306 LOC103381306 txnl4a txnl4a snrnp27 snrnp27 ENSCSEP00000015502 ENSCSEP00000015502 prpf19 prpf19 sf3a3 sf3a3 ENSCSEP00000016386 ENSCSEP00000016386 rbm22 rbm22 sf3a1 sf3a1 hnrnpu hnrnpu prpf40a prpf40a LOC103397093 LOC103397093 tra2b tra2b rbm8a rbm8a xab2 xab2 Snrnp70 Snrnp70 dhx16 dhx16 tra2a tra2a NCBP1 NCBP1 thoc1 thoc1 thoc3 thoc3 srsf2 srsf2 sf3b3 sf3b3 LOC103393708 LOC103393708 LOC103378294 LOC103378294 sf3a2 sf3a2 LOC103378288 LOC103378288 LOC103398733 LOC103398733 lsm7 lsm7 hnrnpm hnrnpm LOC103395982 LOC103395982 lsm3 lsm3 u2surp u2surp sf3b4 sf3b4 ALYREF ALYREF slu7 slu7 smndc1 smndc1 LOC103390134 LOC103390134 snrnp40 snrnp40 lsm4 lsm4 snrnp200 snrnp200 eftud2 eftud2 snrpc snrpc snrpa snrpa ddx46 ddx46 cdc5l cdc5l LOC103393202 LOC103393202 snrpd1 snrpd1 rbm17 rbm17 prpf6 prpf6 cwc15 cwc15 TCERG1 TCERG1 snw1 snw1 prpf31 prpf31 sf3b6 sf3b6 ppih ppih ncbp2 ncbp2 LOC103395051 LOC103395051 HSPA8 HSPA8 cherp cherp Srsf6 Srsf6 PUF60 PUF60 thoc2 thoc2 LOC103395556 LOC103395556 snrpb snrpb LOC103386836 LOC103386836 prpf4 prpf4 LOC103392513 LOC103392513 pqbp1 pqbp1 cdc40 cdc40 LOC103380890 LOC103380890 ddx23 ddx23 eif4a3 eif4a3 Acin1 Acin1 hnrnpc hnrnpc ddx42 ddx42
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (304 aa)
syf2SYF2 pre-mRNA-splicing factor. (239 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (98 aa)
Snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (148 aa)
magohMago homolog, exon junction complex subunit. (134 aa)
LOC103390422Heterogeneous nuclear ribonucleoprotein K, like. (430 aa)
LOC103389252Uncharacterized protein. (227 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (218 aa)
prpf38aPre-mRNA processing factor 38A. (288 aa)
LOC103385776RRM domain-containing protein. (168 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (168 aa)
sart1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (767 aa)
SRSF3Serine and arginine rich splicing factor 3. (204 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (720 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
LOC103391595U2 small nuclear RNA auxiliary factor 1. (212 aa)
ctnnbl1Catenin, beta like 1. (579 aa)
LOC103381207Serine and arginine rich splicing factor 5b. (314 aa)
sf3b1Splicing factor 3b, subunit 1. (1291 aa)
DHX15DEAH-box helicase 15. (761 aa)
ccdc12Coiled-coil domain containing 12. (163 aa)
snrpfSmall nuclear ribonucleoprotein polypeptide F. (97 aa)
aqrAquarius intron-binding spliceosomal factor. (1377 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
rbmxRNA binding motif protein X-linked. (392 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (351 aa)
LOC103388515Heat shock cognate 70; Belongs to the heat shock protein 70 family. (645 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (789 aa)
bud31BUD31 homolog. (144 aa)
Srsf7Serine and arginine rich splicing factor 7a. (140 aa)
zmat2Zinc finger, matrin-type 2. (221 aa)
LOC103390531DEAH (Asp-Glu-Ala-His) box helicase 15. (740 aa)
LOC103379185Uncharacterized protein. (212 aa)
LOC103385130Heterogeneous nuclear ribonucleoprotein A1a. (350 aa)
prpf8Pre-mRNA processing factor 8. (2339 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (633 aa)
ENSCSEP00000012532Splicing factor 3a subunit 1. (263 aa)
srsf5Serine and arginine rich splicing factor 5a. (313 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1252 aa)
ENSCSEP00000013604Small nuclear ribonucleoprotein polypeptide A. (283 aa)
LOC103381306RNA binding motif protein 25a. (806 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
snrnp27Small nuclear ribonucleoprotein 27 (U4/U6.U5). (161 aa)
ENSCSEP00000015502Uncharacterized protein. (262 aa)
prpf19Pre-mRNA processing factor 19. (504 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
ENSCSEP00000016386Uncharacterized protein; Belongs to the heat shock protein 70 family. (618 aa)
rbm22RNA binding motif protein 22. (427 aa)
sf3a1Splicing factor 3a, subunit 1. (786 aa)
hnrnpuHeterogeneous nuclear ribonucleoprotein Ub. (834 aa)
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (783 aa)
LOC103397093Uncharacterized protein. (439 aa)
tra2bTransformer 2 beta homolog. (268 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
xab2XPA binding protein 2. (851 aa)
Snrnp70Small nuclear ribonucleoprotein 70 (U1). (226 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1048 aa)
tra2aTransformer 2 alpha homolog. (301 aa)
NCBP1Nuclear cap binding protein subunit 1. (822 aa)
thoc1THO complex 1. (659 aa)
thoc3THO complex 3. (322 aa)
srsf2Serine and arginine rich splicing factor 2a. (217 aa)
sf3b3Splicing factor 3b, subunit 3. (1003 aa)
LOC103393708DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (612 aa)
LOC103378294Serine and arginine rich splicing factor 1a. (250 aa)
sf3a2Splicing factor 3a, subunit 2. (288 aa)
LOC103378288Uncharacterized protein; Belongs to the heat shock protein 70 family. (635 aa)
LOC103398733Uncharacterized protein. (551 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (120 aa)
hnrnpmHeterogeneous nuclear ribonucleoprotein M. (690 aa)
LOC103395982Uncharacterized protein. (461 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (133 aa)
u2surpU2 snRNP-associated SURP domain containing. (917 aa)
sf3b4Splicing factor 3b, subunit 4. (479 aa)
ALYREFRRM domain-containing protein. (182 aa)
slu7SLU7 homolog, splicing factor. (565 aa)
smndc1Survival motor neuron domain containing 1. (235 aa)
LOC103390134Serine and arginine rich splicing factor 9. (250 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (338 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (142 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2133 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (187 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (280 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1059 aa)
cdc5lCDC5 cell division cycle 5-like (S. pombe). (807 aa)
LOC103393202Aly/REF export factor. (270 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (129 aa)
rbm17RNA binding motif protein 17. (418 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (915 aa)
cwc15CWC15 spliceosome associated protein homolog. (262 aa)
TCERG1Transcription elongation regulator 1. (1056 aa)
snw1SNW domain containing 1. (519 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (502 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (189 aa)
LOC103395051Uncharacterized protein; Belongs to the heat shock protein 70 family. (650 aa)
HSPA8Heat shock protein 8; Belongs to the heat shock protein 70 family. (649 aa)
cherpCalcium homeostasis endoplasmic reticulum protein. (938 aa)
Srsf6Serine and arginine rich splicing factor 6. (238 aa)
PUF60Poly-U binding splicing factor b. (561 aa)
thoc2THO complex 2. (1335 aa)
LOC103395556Zgc:163098. (882 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (263 aa)
LOC103386836ISY1 splicing factor homolog. (323 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (506 aa)
LOC103392513U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (491 aa)
pqbp1Polyglutamine binding protein 1. (230 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (608 aa)
LOC103380890RNA binding motif protein 25b. (803 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (805 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
Acin1Apoptotic chromatin condensation inducer 1a. (919 aa)
hnrnpcRRM domain-containing protein. (313 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (924 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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