6 items (Mycolicibacterium smegmatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABK70154.1	Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738. (704 aa)
	ABK74730.1	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450. (331 aa)
	ABK71441.1	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799. (173 aa)
	ABK76221.1	Oxidoreductase; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738. (721 aa)
	ABK75175.1	Putative aldehyde or xanthine dehydrogenase, molybdopterin binding subunit protein; Identified by match to protein family HMM PF00941. (324 aa)
	ABK72521.1	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799. (205 aa)

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70154.1	ABK71441.1	MSMEG_0684	MSMEG_0686	Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.998
ABK70154.1	ABK72521.1	MSMEG_0684	MSMEG_0872	Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.993
ABK70154.1	ABK74730.1	MSMEG_0684	MSMEG_0685	Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.	0.997
ABK70154.1	ABK75175.1	MSMEG_0684	MSMEG_0871	Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	Putative aldehyde or xanthine dehydrogenase, molybdopterin binding subunit protein; Identified by match to protein family HMM PF00941.	0.989
ABK70154.1	ABK76221.1	MSMEG_0684	MSMEG_0870	Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	Oxidoreductase; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	0.916
ABK71441.1	ABK70154.1	MSMEG_0686	MSMEG_0684	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	0.998
ABK71441.1	ABK72521.1	MSMEG_0686	MSMEG_0872	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.907
ABK71441.1	ABK74730.1	MSMEG_0686	MSMEG_0685	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.	0.997
ABK71441.1	ABK75175.1	MSMEG_0686	MSMEG_0871	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Putative aldehyde or xanthine dehydrogenase, molybdopterin binding subunit protein; Identified by match to protein family HMM PF00941.	0.989
ABK71441.1	ABK76221.1	MSMEG_0686	MSMEG_0870	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Oxidoreductase; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	0.991
ABK72521.1	ABK70154.1	MSMEG_0872	MSMEG_0684	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	0.993
ABK72521.1	ABK71441.1	MSMEG_0872	MSMEG_0686	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.907
ABK72521.1	ABK74730.1	MSMEG_0872	MSMEG_0685	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.	0.982
ABK72521.1	ABK75175.1	MSMEG_0872	MSMEG_0871	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Putative aldehyde or xanthine dehydrogenase, molybdopterin binding subunit protein; Identified by match to protein family HMM PF00941.	0.996
ABK72521.1	ABK76221.1	MSMEG_0872	MSMEG_0870	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Oxidoreductase; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	0.999
ABK74730.1	ABK70154.1	MSMEG_0685	MSMEG_0684	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.	Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	0.997
ABK74730.1	ABK71441.1	MSMEG_0685	MSMEG_0686	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.997
ABK74730.1	ABK72521.1	MSMEG_0685	MSMEG_0872	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.982
ABK74730.1	ABK75175.1	MSMEG_0685	MSMEG_0871	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.	Putative aldehyde or xanthine dehydrogenase, molybdopterin binding subunit protein; Identified by match to protein family HMM PF00941.	0.907
ABK74730.1	ABK76221.1	MSMEG_0685	MSMEG_0870	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.	Oxidoreductase; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.	0.989