5 items (Mycolicibacterium smegmatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABK75134.1	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. (455 aa)
	katA	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199. (485 aa)
	ABK74752.1	Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. (359 aa)
	ABK74357.1	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. (455 aa)
	katA-2	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199. (553 aa)

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK74357.1	ABK74752.1	MSMEG_5037	MSMEG_3708	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.	0.925
ABK74357.1	ABK75134.1	MSMEG_5037	MSMEG_0301	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.903
ABK74357.1	katA	MSMEG_5037	MSMEG_3486	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	0.926
ABK74357.1	katA-2	MSMEG_5037	MSMEG_6232	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	0.927
ABK74752.1	ABK74357.1	MSMEG_3708	MSMEG_5037	Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.925
ABK74752.1	ABK75134.1	MSMEG_3708	MSMEG_0301	Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.926
ABK74752.1	katA	MSMEG_3708	MSMEG_3486	Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	0.930
ABK74752.1	katA-2	MSMEG_3708	MSMEG_6232	Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	0.928
ABK75134.1	ABK74357.1	MSMEG_0301	MSMEG_5037	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.903
ABK75134.1	ABK74752.1	MSMEG_0301	MSMEG_3708	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.	0.926
ABK75134.1	katA	MSMEG_0301	MSMEG_3486	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	0.926
ABK75134.1	katA-2	MSMEG_0301	MSMEG_6232	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	0.927
katA	ABK74357.1	MSMEG_3486	MSMEG_5037	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.926
katA	ABK74752.1	MSMEG_3486	MSMEG_3708	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.	0.930
katA	ABK75134.1	MSMEG_3486	MSMEG_0301	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.926
katA	katA-2	MSMEG_3486	MSMEG_6232	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	0.913
katA-2	ABK74357.1	MSMEG_6232	MSMEG_5037	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.927
katA-2	ABK74752.1	MSMEG_6232	MSMEG_3708	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.	0.928
katA-2	ABK75134.1	MSMEG_6232	MSMEG_0301	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.927
katA-2	katA	MSMEG_6232	MSMEG_3486	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.	0.913