Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69811.1 | ABK71056.1 | MSMEG_4221 | MSMEG_0032 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | Cell cycle protein, FtsW/RodA/SpoVE family protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | 0.418 |
| ABK69811.1 | ABK72274.1 | MSMEG_4221 | MSMEG_4220 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | Conserved hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis. | 0.936 |
| ABK69811.1 | ABK73546.1 | MSMEG_4221 | MSMEG_4224 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.483 |
| ABK69811.1 | ABK76053.1 | MSMEG_4221 | MSMEG_2584 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | Penicillin-binding protein, putative; Identified by match to protein family HMM PF00905; match to protein family HMM PF05223. | 0.422 |
| ABK69811.1 | ABK76142.1 | MSMEG_4221 | MSMEG_4218 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | Possible conserved transmembrane protein. | 0.662 |
| ABK69811.1 | ftsW | MSMEG_4221 | MSMEG_4228 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | Cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family. | 0.607 |
| ABK69811.1 | ftsZ | MSMEG_4221 | MSMEG_4222 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.857 |
| ABK69811.1 | mraY | MSMEG_4221 | MSMEG_4230 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.527 |
| ABK69811.1 | murC | MSMEG_4221 | MSMEG_4226 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.573 |
| ABK69811.1 | murD | MSMEG_4221 | MSMEG_4229 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.569 |
| ABK69811.1 | murG | MSMEG_4221 | MSMEG_4227 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.601 |
| ABK69811.1 | pbpB | MSMEG_4221 | MSMEG_4233 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | Penicillin binding protein transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; Belongs to the transpeptidase family. | 0.597 |
| ABK69811.1 | sepF | MSMEG_4221 | MSMEG_4219 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | Conserved hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | 0.919 |
| ABK69811.1 | wag31 | MSMEG_4221 | MSMEG_4217 | Conserved hypothetical protein; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family. | DivIVA protein; Important for maintaining cell shape and cell wall integrity by localizing peptidoglycan synthesis to the cell poles. Protects PbpB (PBP3, FtsI) from oxidative stress-induced cleavage. Belongs to the DivIVA family. | 0.524 |
| ABK70020.1 | ABK72306.1 | MSMEG_1200 | MSMEG_0033 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | Protein phosphatase 2C; Identified by match to protein family HMM PF00481. | 0.868 |
| ABK70020.1 | ABK75945.1 | MSMEG_1200 | MSMEG_1928 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | Identified by match to protein family HMM PF00481. | 0.875 |
| ABK70020.1 | fhaB | MSMEG_1200 | MSMEG_0034 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | FHA domain protein; Regulates growth and cell division. Probably required for divisomal protein assembly under oxidative stress. | 0.547 |
| ABK70020.1 | garA | MSMEG_1200 | MSMEG_3647 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | Forkhead-associated protein; Involved in regulation of glutamate metabolism. Acts as a phosphorylation-dependent molecular switch that modulates the activities of Kgd and Gdh. | 0.752 |
| ABK70020.1 | pknB | MSMEG_1200 | MSMEG_0028 | Serine/threonine-protein kinase PknD; Identified by match to protein family HMM PF00069; match to protein family HMM PF00497. | Serine-threonine protein kinase; Protein kinase that regulates many aspects of mycobacterial physiology. Is a key component of a signal transduction pathway that regulates cell growth, cell shape and cell division via phosphorylation of target proteins (By similarity). Probably phosphorylates RseA. | 0.603 |
| ABK70790.1 | ABK71056.1 | MSMEG_6201 | MSMEG_0032 | Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF03793. | Cell cycle protein, FtsW/RodA/SpoVE family protein; Identified by match to protein family HMM PF01098; Belongs to the SEDS family. | 0.699 |
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