5 items (Mycolicibacterium smegmatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABK71911.1	Conserved domain protein; Identified by match to protein family HMM PF03621. (88 aa)
	ABK72398.1	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733. (7523 aa)
	ABK72915.1	Conserved domain protein; Identified by match to protein family HMM PF03621. (69 aa)
	ABK72785.1	Linear gramicidin synthetase subunit B; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733. (1819 aa)
	ABK71774.1	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801. (1816 aa)

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71774.1	ABK71911.1	MSMEG_6392	MSMEG_0016	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Conserved domain protein; Identified by match to protein family HMM PF03621.	0.983
ABK71774.1	ABK72398.1	MSMEG_6392	MSMEG_0019	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.997
ABK71774.1	ABK72785.1	MSMEG_6392	MSMEG_4511	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Linear gramicidin synthetase subunit B; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.	0.997
ABK71774.1	ABK72915.1	MSMEG_6392	MSMEG_4508	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Conserved domain protein; Identified by match to protein family HMM PF03621.	0.983
ABK71911.1	ABK71774.1	MSMEG_0016	MSMEG_6392	Conserved domain protein; Identified by match to protein family HMM PF03621.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.983
ABK71911.1	ABK72398.1	MSMEG_0016	MSMEG_0019	Conserved domain protein; Identified by match to protein family HMM PF03621.	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.999
ABK71911.1	ABK72785.1	MSMEG_0016	MSMEG_4511	Conserved domain protein; Identified by match to protein family HMM PF03621.	Linear gramicidin synthetase subunit B; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.	0.914
ABK71911.1	ABK72915.1	MSMEG_0016	MSMEG_4508	Conserved domain protein; Identified by match to protein family HMM PF03621.	Conserved domain protein; Identified by match to protein family HMM PF03621.	0.907
ABK72398.1	ABK71774.1	MSMEG_0019	MSMEG_6392	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.997
ABK72398.1	ABK71911.1	MSMEG_0019	MSMEG_0016	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Conserved domain protein; Identified by match to protein family HMM PF03621.	0.999
ABK72398.1	ABK72785.1	MSMEG_0019	MSMEG_4511	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Linear gramicidin synthetase subunit B; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.	0.987
ABK72398.1	ABK72915.1	MSMEG_0019	MSMEG_4508	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	Conserved domain protein; Identified by match to protein family HMM PF03621.	0.999
ABK72785.1	ABK71774.1	MSMEG_4511	MSMEG_6392	Linear gramicidin synthetase subunit B; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.997
ABK72785.1	ABK71911.1	MSMEG_4511	MSMEG_0016	Linear gramicidin synthetase subunit B; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.	Conserved domain protein; Identified by match to protein family HMM PF03621.	0.914
ABK72785.1	ABK72398.1	MSMEG_4511	MSMEG_0019	Linear gramicidin synthetase subunit B; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.987
ABK72785.1	ABK72915.1	MSMEG_4511	MSMEG_4508	Linear gramicidin synthetase subunit B; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.	Conserved domain protein; Identified by match to protein family HMM PF03621.	0.978
ABK72915.1	ABK71774.1	MSMEG_4508	MSMEG_6392	Conserved domain protein; Identified by match to protein family HMM PF03621.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.983
ABK72915.1	ABK71911.1	MSMEG_4508	MSMEG_0016	Conserved domain protein; Identified by match to protein family HMM PF03621.	Conserved domain protein; Identified by match to protein family HMM PF03621.	0.907
ABK72915.1	ABK72398.1	MSMEG_4508	MSMEG_0019	Conserved domain protein; Identified by match to protein family HMM PF03621.	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.999
ABK72915.1	ABK72785.1	MSMEG_4508	MSMEG_4511	Conserved domain protein; Identified by match to protein family HMM PF03621.	Linear gramicidin synthetase subunit B; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.	0.978