Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK71532.1 | ABK73398.1 | MSMEG_5457 | MSMEG_0673 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Hypothetical protein; Identified by Glimmer2; putative. | 0.403 |
| ABK71532.1 | ABK75112.1 | MSMEG_5457 | MSMEG_6704 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 0.961 |
| ABK71532.1 | aroA | MSMEG_5457 | MSMEG_1890 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.665 |
| ABK71532.1 | aroB | MSMEG_5457 | MSMEG_3033 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.577 |
| ABK71532.1 | aroC | MSMEG_5457 | MSMEG_3030 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.767 |
| ABK71532.1 | aroE | MSMEG_5457 | MSMEG_3028 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Shikimate-5-dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM TIGR01809; Belongs to the shikimate dehydrogenase family. | 0.929 |
| ABK71532.1 | aroK-2 | MSMEG_5457 | MSMEG_3031 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.950 |
| ABK71532.1 | aroQ | MSMEG_5457 | MSMEG_1922 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.930 |
| ABK71532.1 | aroQ-2 | MSMEG_5457 | MSMEG_2532 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Dehydroquinase dehydratase, type II; Identified by match to protein family HMM PF01220. | 0.930 |
| ABK71532.1 | trpB | MSMEG_5457 | MSMEG_3220 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.417 |
| ABK71532.1 | trpC | MSMEG_5457 | MSMEG_3219 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Indole-3-glycerol phosphate synthase; Identified by match to protein family HMM PF00218; Belongs to the TrpC family. | 0.479 |
| ABK71789.1 | ABK71866.1 | MSMEG_6330 | MSMEG_5536 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. | 0.965 |
| ABK71789.1 | ABK72386.1 | MSMEG_6330 | MSMEG_2799 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP). | 0.842 |
| ABK71789.1 | aroA | MSMEG_6330 | MSMEG_1890 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.755 |
| ABK71789.1 | aroB | MSMEG_6330 | MSMEG_3033 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.888 |
| ABK71789.1 | aroC | MSMEG_6330 | MSMEG_3030 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.917 |
| ABK71789.1 | aroK-2 | MSMEG_6330 | MSMEG_3031 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.781 |
| ABK71789.1 | pheA | MSMEG_6330 | MSMEG_6418 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842. | 0.989 |
| ABK71789.1 | trpA | MSMEG_6330 | MSMEG_3221 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.825 |
| ABK71789.1 | trpB | MSMEG_6330 | MSMEG_3220 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.403 |
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