10 items (Mycolicibacterium smegmatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABK71860.1	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520. (264 aa)
	ABK72323.1	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520. (396 aa)
	ABK72652.1	Gp236 protein. (179 aa)
	ripA	Secreted cell wall-associated hydrolase; Peptidoglycan endopeptidase that cleaves the bond between D- glutamate and meso-diaminopimelate. Binds and degrades high-molecular weight peptidoglycan. Required for normal separation of daughter cells after cell division and for cell wall integrity (By similarity). (497 aa)
	ABK72734.1	Conserved hypothetical protein. (216 aa)
	ABK76085.1	Secreted protein. (433 aa)
	ABK72792.1	Gp35 protein; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510. (275 aa)
	ABK70245.1	LpqU protein. (224 aa)
	rpfB	Resuscitation-promoting factor RpfB; Factor that stimulates resuscitation of dormant cells. Has peptidoglycan (PG) hydrolytic activity. Active in the pM concentration range. Has little to no effect on actively-growing cells. PG fragments could either directly activate the resuscitation pathway of dormant bacteria or serve as a substrate for endogenous Rpf, resulting in low molecular weight products with resuscitation activity (By similarity). Belongs to the transglycosylase family. Rpf subfamily. (375 aa)
	ABK75413.1	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510. (536 aa)

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71860.1	ABK72323.1	MSMEG_6281	MSMEG_6935	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	0.989
ABK71860.1	ABK72652.1	MSMEG_6281	MSMEG_0533	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.	Gp236 protein.	0.436
ABK71860.1	ABK72792.1	MSMEG_6281	MSMEG_5315	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.	Gp35 protein; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510.	0.892
ABK71860.1	ABK75413.1	MSMEG_6281	MSMEG_6406	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	0.900
ABK71860.1	ripA	MSMEG_6281	MSMEG_3145	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.	Secreted cell wall-associated hydrolase; Peptidoglycan endopeptidase that cleaves the bond between D- glutamate and meso-diaminopimelate. Binds and degrades high-molecular weight peptidoglycan. Required for normal separation of daughter cells after cell division and for cell wall integrity (By similarity).	0.625
ABK72323.1	ABK71860.1	MSMEG_6935	MSMEG_6281	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.	0.989
ABK72323.1	ABK72652.1	MSMEG_6935	MSMEG_0533	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	Gp236 protein.	0.454
ABK72323.1	ABK72792.1	MSMEG_6935	MSMEG_5315	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	Gp35 protein; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510.	0.896
ABK72323.1	ABK75413.1	MSMEG_6935	MSMEG_6406	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	0.870
ABK72323.1	ripA	MSMEG_6935	MSMEG_3145	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	Secreted cell wall-associated hydrolase; Peptidoglycan endopeptidase that cleaves the bond between D- glutamate and meso-diaminopimelate. Binds and degrades high-molecular weight peptidoglycan. Required for normal separation of daughter cells after cell division and for cell wall integrity (By similarity).	0.435
ABK72323.1	rpfB	MSMEG_6935	MSMEG_5439	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	Resuscitation-promoting factor RpfB; Factor that stimulates resuscitation of dormant cells. Has peptidoglycan (PG) hydrolytic activity. Active in the pM concentration range. Has little to no effect on actively-growing cells. PG fragments could either directly activate the resuscitation pathway of dormant bacteria or serve as a substrate for endogenous Rpf, resulting in low molecular weight products with resuscitation activity (By similarity). Belongs to the transglycosylase family. Rpf subfamily.	0.589
ABK72652.1	ABK71860.1	MSMEG_0533	MSMEG_6281	Gp236 protein.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.	0.436
ABK72652.1	ABK72323.1	MSMEG_0533	MSMEG_6935	Gp236 protein.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	0.454
ABK72652.1	ABK75413.1	MSMEG_0533	MSMEG_6406	Gp236 protein.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	0.500
ABK72652.1	ABK76085.1	MSMEG_0533	MSMEG_5067	Gp236 protein.	Secreted protein.	0.595
ABK72792.1	ABK71860.1	MSMEG_5315	MSMEG_6281	Gp35 protein; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.	0.892
ABK72792.1	ABK72323.1	MSMEG_5315	MSMEG_6935	Gp35 protein; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01520.	0.896
ABK72792.1	ABK75413.1	MSMEG_5315	MSMEG_6406	Gp35 protein; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	0.906
ABK72792.1	ABK76085.1	MSMEG_5315	MSMEG_5067	Gp35 protein; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510.	Secreted protein.	0.534
ABK75413.1	ABK71860.1	MSMEG_6406	MSMEG_6281	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.	0.900