5 items (Mycolicibacterium smegmatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABK75175.1	Putative aldehyde or xanthine dehydrogenase, molybdopterin binding subunit protein; Identified by match to protein family HMM PF00941. (324 aa)
	ABK75536.1	Nicotine dehydrogenase chain A; Identified by match to protein family HMM PF00941. (293 aa)
	ABK74730.1	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450. (331 aa)
	ABK71665.1	Carbon monoxide dehydrogenase medium chain; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450. (295 aa)
	ABK75483.1	Carbon monoxide dehydrogenase medium chain; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450. (296 aa)

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK74730.1	ABK75175.1	MSMEG_0685	MSMEG_0871	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.	Putative aldehyde or xanthine dehydrogenase, molybdopterin binding subunit protein; Identified by match to protein family HMM PF00941.	0.907
ABK75175.1	ABK74730.1	MSMEG_0871	MSMEG_0685	Putative aldehyde or xanthine dehydrogenase, molybdopterin binding subunit protein; Identified by match to protein family HMM PF00941.	Oxidoreductase, molybdopterin-binding subunit; Identified by match to protein family HMM PF00941; match to protein family HMM PF03450.	0.907