(7 nodes) Malonyl-CoA ACP transacylase, ACP-binding network (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fabD	Malonyl CoA-acyl carrier protein transacylase; Belongs to the FabD family. (290 aa)
	ABK75467.1	Polyketide synthetase mbtd; Identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370. (997 aa)
	pks5	Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis. (2111 aa)
	ABK71774.1	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801. (1816 aa)
	mdcH	Malonate decarboxylase, epsilon subunit; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR03131. (299 aa)
	ABK70529.1	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801. (1826 aa)
	pks	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801. (3652 aa)

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70529.1	ABK71774.1	MSMEG_6767	MSMEG_6392	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.964
ABK70529.1	ABK75467.1	MSMEG_6767	MSMEG_4512	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthetase mbtd; Identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370.	0.696
ABK70529.1	fabD	MSMEG_6767	MSMEG_4325	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Malonyl CoA-acyl carrier protein transacylase; Belongs to the FabD family.	0.990
ABK70529.1	mdcH	MSMEG_6767	MSMEG_6629	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Malonate decarboxylase, epsilon subunit; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR03131.	0.991
ABK70529.1	pks	MSMEG_6767	MSMEG_0408	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.966
ABK70529.1	pks5	MSMEG_6767	MSMEG_4727	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.	0.903
ABK71774.1	ABK70529.1	MSMEG_6392	MSMEG_6767	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.964
ABK71774.1	ABK75467.1	MSMEG_6392	MSMEG_4512	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Polyketide synthetase mbtd; Identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370.	0.852
ABK71774.1	fabD	MSMEG_6392	MSMEG_4325	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Malonyl CoA-acyl carrier protein transacylase; Belongs to the FabD family.	0.978
ABK71774.1	mdcH	MSMEG_6392	MSMEG_6629	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Malonate decarboxylase, epsilon subunit; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR03131.	0.978
ABK71774.1	pks	MSMEG_6392	MSMEG_0408	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.990
ABK71774.1	pks5	MSMEG_6392	MSMEG_4727	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.	0.968
ABK75467.1	ABK70529.1	MSMEG_4512	MSMEG_6767	Polyketide synthetase mbtd; Identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370.	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.696
ABK75467.1	ABK71774.1	MSMEG_4512	MSMEG_6392	Polyketide synthetase mbtd; Identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.852
ABK75467.1	fabD	MSMEG_4512	MSMEG_4325	Polyketide synthetase mbtd; Identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370.	Malonyl CoA-acyl carrier protein transacylase; Belongs to the FabD family.	0.738
ABK75467.1	mdcH	MSMEG_4512	MSMEG_6629	Polyketide synthetase mbtd; Identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370.	Malonate decarboxylase, epsilon subunit; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR03131.	0.720
ABK75467.1	pks	MSMEG_4512	MSMEG_0408	Polyketide synthetase mbtd; Identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.895
ABK75467.1	pks5	MSMEG_4512	MSMEG_4727	Polyketide synthetase mbtd; Identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370.	Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.	0.749
fabD	ABK70529.1	MSMEG_4325	MSMEG_6767	Malonyl CoA-acyl carrier protein transacylase; Belongs to the FabD family.	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.990
fabD	ABK71774.1	MSMEG_4325	MSMEG_6392	Malonyl CoA-acyl carrier protein transacylase; Belongs to the FabD family.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.978