7 items (Mycolicibacterium smegmatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABK71441.1	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799. (173 aa)
	ABK73876.1	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799. (170 aa)
	ABK70053.1	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799. (161 aa)
	ABK73128.1	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799. (168 aa)
	ABK72488.1	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738. (893 aa)
	ABK72521.1	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799. (205 aa)
	ABK71192.1	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799. (158 aa)

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70053.1	ABK72488.1	MSMEG_2951	MSMEG_1291	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	0.677
ABK71192.1	ABK72488.1	MSMEG_0745	MSMEG_1291	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	0.677
ABK71441.1	ABK72488.1	MSMEG_0686	MSMEG_1291	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	0.683
ABK71441.1	ABK72521.1	MSMEG_0686	MSMEG_0872	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.907
ABK72488.1	ABK70053.1	MSMEG_1291	MSMEG_2951	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.677
ABK72488.1	ABK71192.1	MSMEG_1291	MSMEG_0745	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.677
ABK72488.1	ABK71441.1	MSMEG_1291	MSMEG_0686	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.683
ABK72488.1	ABK72521.1	MSMEG_1291	MSMEG_0872	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.701
ABK72488.1	ABK73128.1	MSMEG_1291	MSMEG_2464	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.800
ABK72488.1	ABK73876.1	MSMEG_1291	MSMEG_5883	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.794
ABK72521.1	ABK71441.1	MSMEG_0872	MSMEG_0686	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	0.907
ABK72521.1	ABK72488.1	MSMEG_0872	MSMEG_1291	Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	0.701
ABK73128.1	ABK72488.1	MSMEG_2464	MSMEG_1291	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	0.800
ABK73876.1	ABK72488.1	MSMEG_5883	MSMEG_1291	[2Fe-2S] binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.	Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.	0.794