Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69884.1 | ABK72096.1 | MSMEG_3945 | MSMEG_3939 | Identified by match to protein family HMM PF00582. | Identified by match to protein family HMM PF00582. | 0.476 |
| ABK70862.1 | fbpB | MSMEG_3662 | MSMEG_2078 | Mannose-binding lectin; Identified by match to protein family HMM PF01453; match to protein family HMM PF01476. | Antigen 85-C; The antigen 85 proteins (FbpA, FbpB, FbpC) are responsible for the high affinity of mycobacteria for fibronectin, a large adhesive glycoprotein. They also help to maintain the integrity of the cell wall by catalyzing the transfer of mycolic acids to cell wall arabinogalactan and through the synthesis of alpha,alpha-trehalose dimycolate (TDM, cord factor). They catalyze the transfer of a mycoloyl residue from one molecule of alpha,alpha-trehalose monomycolate (TMM) to another TMM, leading to the formation of TDM (By similarity). | 0.571 |
| ABK71201.1 | rpfB | MSMEG_4256 | MSMEG_5439 | Identified by match to protein family HMM PF00877. | Resuscitation-promoting factor RpfB; Factor that stimulates resuscitation of dormant cells. Has peptidoglycan (PG) hydrolytic activity. Active in the pM concentration range. Has little to no effect on actively-growing cells. PG fragments could either directly activate the resuscitation pathway of dormant bacteria or serve as a substrate for endogenous Rpf, resulting in low molecular weight products with resuscitation activity (By similarity). Belongs to the transglycosylase family. Rpf subfamily. | 0.506 |
| ABK71390.1 | ABK72096.1 | MSMEG_3940 | MSMEG_3939 | Identified by match to protein family HMM PF00582. | Identified by match to protein family HMM PF00582. | 0.707 |
| ABK71731.1 | ABK72096.1 | MSMEG_5245 | MSMEG_3939 | Identified by match to protein family HMM PF00582. | Identified by match to protein family HMM PF00582. | 0.426 |
| ABK72096.1 | ABK69884.1 | MSMEG_3939 | MSMEG_3945 | Identified by match to protein family HMM PF00582. | Identified by match to protein family HMM PF00582. | 0.476 |
| ABK72096.1 | ABK71390.1 | MSMEG_3939 | MSMEG_3940 | Identified by match to protein family HMM PF00582. | Identified by match to protein family HMM PF00582. | 0.707 |
| ABK72096.1 | ABK71731.1 | MSMEG_3939 | MSMEG_5245 | Identified by match to protein family HMM PF00582. | Identified by match to protein family HMM PF00582. | 0.426 |
| ABK72096.1 | ABK73928.1 | MSMEG_3939 | MSMEG_3950 | Identified by match to protein family HMM PF00582. | Identified by match to protein family HMM PF00582; Belongs to the universal stress protein A family. | 0.476 |
| ABK72096.1 | ABK75323.1 | MSMEG_3939 | MSMEG_5733 | Identified by match to protein family HMM PF00582. | Identified by match to protein family HMM PF00582. | 0.467 |
| ABK72627.1 | ABK74158.1 | MSMEG_1539 | MSMEG_1538 | Conserved hypothetical protein; Belongs to the WXG100 family. | Conserved hypothetical protein; Belongs to the WXG100 family. | 0.997 |
| ABK72627.1 | fbpB | MSMEG_1539 | MSMEG_2078 | Conserved hypothetical protein; Belongs to the WXG100 family. | Antigen 85-C; The antigen 85 proteins (FbpA, FbpB, FbpC) are responsible for the high affinity of mycobacteria for fibronectin, a large adhesive glycoprotein. They also help to maintain the integrity of the cell wall by catalyzing the transfer of mycolic acids to cell wall arabinogalactan and through the synthesis of alpha,alpha-trehalose dimycolate (TDM, cord factor). They catalyze the transfer of a mycoloyl residue from one molecule of alpha,alpha-trehalose monomycolate (TMM) to another TMM, leading to the formation of TDM (By similarity). | 0.602 |
| ABK73928.1 | ABK72096.1 | MSMEG_3950 | MSMEG_3939 | Identified by match to protein family HMM PF00582; Belongs to the universal stress protein A family. | Identified by match to protein family HMM PF00582. | 0.476 |
| ABK74158.1 | ABK72627.1 | MSMEG_1538 | MSMEG_1539 | Conserved hypothetical protein; Belongs to the WXG100 family. | Conserved hypothetical protein; Belongs to the WXG100 family. | 0.997 |
| ABK74158.1 | ABK75825.1 | MSMEG_1538 | MSMEG_1871 | Conserved hypothetical protein; Belongs to the WXG100 family. | Conserved hypothetical protein; Belongs to the WXG100 family. | 0.848 |
| ABK75323.1 | ABK72096.1 | MSMEG_5733 | MSMEG_3939 | Identified by match to protein family HMM PF00582. | Identified by match to protein family HMM PF00582. | 0.467 |
| ABK75825.1 | ABK74158.1 | MSMEG_1871 | MSMEG_1538 | Conserved hypothetical protein; Belongs to the WXG100 family. | Conserved hypothetical protein; Belongs to the WXG100 family. | 0.848 |
| fbpB | ABK70862.1 | MSMEG_2078 | MSMEG_3662 | Antigen 85-C; The antigen 85 proteins (FbpA, FbpB, FbpC) are responsible for the high affinity of mycobacteria for fibronectin, a large adhesive glycoprotein. They also help to maintain the integrity of the cell wall by catalyzing the transfer of mycolic acids to cell wall arabinogalactan and through the synthesis of alpha,alpha-trehalose dimycolate (TDM, cord factor). They catalyze the transfer of a mycoloyl residue from one molecule of alpha,alpha-trehalose monomycolate (TMM) to another TMM, leading to the formation of TDM (By similarity). | Mannose-binding lectin; Identified by match to protein family HMM PF01453; match to protein family HMM PF01476. | 0.571 |
| fbpB | ABK72627.1 | MSMEG_2078 | MSMEG_1539 | Antigen 85-C; The antigen 85 proteins (FbpA, FbpB, FbpC) are responsible for the high affinity of mycobacteria for fibronectin, a large adhesive glycoprotein. They also help to maintain the integrity of the cell wall by catalyzing the transfer of mycolic acids to cell wall arabinogalactan and through the synthesis of alpha,alpha-trehalose dimycolate (TDM, cord factor). They catalyze the transfer of a mycoloyl residue from one molecule of alpha,alpha-trehalose monomycolate (TMM) to another TMM, leading to the formation of TDM (By similarity). | Conserved hypothetical protein; Belongs to the WXG100 family. | 0.602 |
| fbpB | phoP | MSMEG_2078 | MSMEG_5872 | Antigen 85-C; The antigen 85 proteins (FbpA, FbpB, FbpC) are responsible for the high affinity of mycobacteria for fibronectin, a large adhesive glycoprotein. They also help to maintain the integrity of the cell wall by catalyzing the transfer of mycolic acids to cell wall arabinogalactan and through the synthesis of alpha,alpha-trehalose dimycolate (TDM, cord factor). They catalyze the transfer of a mycoloyl residue from one molecule of alpha,alpha-trehalose monomycolate (TMM) to another TMM, leading to the formation of TDM (By similarity). | DNA-binding response regulator PhoP; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. | 0.548 |
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