Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70591.1 | ABK70656.1 | MSMEG_2870 | MSMEG_2077 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028. | 0.592 |
| ABK70591.1 | ABK70837.1 | MSMEG_2870 | MSMEG_4864 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | 3-ketosteroid dehydrogenase; Identified by match to protein family HMM PF00890. | 0.968 |
| ABK70591.1 | ABK70902.1 | MSMEG_2870 | MSMEG_2869 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | 3-ketosteroid-delta-1-dehydrogenase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266. | 0.991 |
| ABK70591.1 | ABK71075.1 | MSMEG_2870 | MSMEG_2891 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | Biphenyl-2,3-diol 1,2-dioxygenase 1; Identified by match to protein family HMM PF00903. | 0.815 |
| ABK70591.1 | ABK71225.1 | MSMEG_2870 | MSMEG_5867 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | Nuclear transport factor 2 (NTF2) domain superfamily protein; Identified by match to protein family HMM PF02136. | 0.718 |
| ABK70591.1 | ABK71346.1 | MSMEG_2870 | MSMEG_6038 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | Pigment production hydroxylase; Identified by match to protein family HMM PF08028. | 0.800 |
| ABK70591.1 | ABK71760.1 | MSMEG_2870 | MSMEG_2873 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | 3-ketosteroid-delta4; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266. | 0.918 |
| ABK70591.1 | ABK72155.1 | MSMEG_2870 | MSMEG_2893 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | Oxidoreductase, NAD/FAD-binding; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970. | 0.966 |
| ABK70591.1 | ABK72635.1 | MSMEG_2870 | MSMEG_2867 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | 3-ketosteroid dehydrogenase; Identified by match to protein family HMM PF00890. | 0.957 |
| ABK70591.1 | ABK73174.1 | MSMEG_2870 | MSMEG_2892 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | Pigment production hydroxylase; Identified by match to protein family HMM PF08028. | 0.786 |
| ABK70591.1 | ABK73895.1 | MSMEG_2870 | MSMEG_6036 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | Biphenyl-2,3-diol 1,2-dioxygenase; Identified by match to protein family HMM PF00903. | 0.867 |
| ABK70591.1 | ABK73925.1 | MSMEG_2870 | MSMEG_5258 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | Steroid delta-isomerase; Identified by match to protein family HMM PF02136. | 0.661 |
| ABK70591.1 | ABK74305.1 | MSMEG_2870 | MSMEG_6037 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; Identified by match to protein family HMM PF00561. | 0.759 |
| ABK70591.1 | ABK74503.1 | MSMEG_2870 | MSMEG_3657 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | Succinate dehydrogenase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266. | 0.608 |
| ABK70591.1 | cyp125 | MSMEG_2870 | MSMEG_5995 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | P450 heme-thiolate protein; Involved in the utilization of cholesterol as the sole carbon and energy source by degrading the side chain. Primarily catalyzes the sequential oxidation of the terminal methyl of cholest-4-en-3-one into (25S)-26-hydroxycholest-4-en-3-one (alcohol), (25S)-26-oxocholest-4-en- 3-one (aldehyde), to finally yield the carboxylic acid (25S)-3- oxocholest-4-en-26-oate. Also able to sequentially oxidize cholesterol itself, not only cholest-4-en-3-one. | 0.471 |
| ABK70591.1 | ksdD | MSMEG_2870 | MSMEG_5941 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | 3-ketosteroid dehydrogenase; Catalyzes the elimination of the C-1 and C-2 hydrogen atoms of the A-ring from the polycyclic ring structure of 3-ketosteroids. Is also involved in the formation of 1,4-androstadiene-3,17-dione (ADD) from 4-androstene-3,17-dione (AD) to. | 0.988 |
| ABK70591.1 | kshA | MSMEG_2870 | MSMEG_5925 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | Rieske [2Fe-2S] domain protein; Involved in the degradation of cholesterol. Catalyzes the introduction of a 9a-hydroxyl moiety into 1,4-androstadiene-3,17-dione (ADD) to yield the 9alpha-hydroxy-1,4-androstadiene-3,17-dione (9OHADD) intermediate which spontaneously form 3-hydroxy-9,10-seconandrost- 1,3,5(10)-triene-9,17-dione (HSA) via the meta-cleavage of ring B with concomitant aromatization of ring A. | 0.903 |
| ABK70591.1 | kshB | MSMEG_2870 | MSMEG_6039 | Oxygenase KshA; Identified by match to protein family HMM PF00355. | Oxidoreductase, electron transfer component; Involved in the degradation of cholesterol. Catalyzes the introduction of a 9a-hydroxyl moiety into 1,4-androstadiene-3,17-dione (ADD) to yield the 9alpha-hydroxy-1,4-androstadiene-3,17-dione (9OHADD) intermediate which spontaneously form 3-hydroxy-9,10-seconandrost- 1,3,5(10)-triene-9,17-dione (HSA) via the meta-cleavage of ring B with concomitant aromatization of ring A. | 0.995 |
| ABK70656.1 | ABK70591.1 | MSMEG_2077 | MSMEG_2870 | acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028. | Oxygenase KshA; Identified by match to protein family HMM PF00355. | 0.592 |
| ABK70656.1 | ABK70837.1 | MSMEG_2077 | MSMEG_4864 | acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF08028. | 3-ketosteroid dehydrogenase; Identified by match to protein family HMM PF00890. | 0.558 |
page 1 of 20