5 items (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MXAN_2627	Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559. (164 aa)
	carB	Carbamoyl-phosphate synthase, large subunit; Identified by similarity to SP:P38100; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369. (1083 aa)
	carQ	RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)
	carD	Transcriptional regulator CarD; Identified by similarity to GB:CAA91224.1; match to protein family HMM PF02178; match to protein family HMM PF02559. (316 aa)
	nusG	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination. (180 aa)

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
carB	carD	MXAN_3388	MXAN_5622	Carbamoyl-phosphate synthase, large subunit; Identified by similarity to SP:P38100; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369.	Transcriptional regulator CarD; Identified by similarity to GB:CAA91224.1; match to protein family HMM PF02178; match to protein family HMM PF02559.	0.440
carB	carQ	MXAN_3388	MXAN_4088	Carbamoyl-phosphate synthase, large subunit; Identified by similarity to SP:P38100; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369.	RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	0.788
carD	carB	MXAN_5622	MXAN_3388	Transcriptional regulator CarD; Identified by similarity to GB:CAA91224.1; match to protein family HMM PF02178; match to protein family HMM PF02559.	Carbamoyl-phosphate synthase, large subunit; Identified by similarity to SP:P38100; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369.	0.440
carD	carQ	MXAN_5622	MXAN_4088	Transcriptional regulator CarD; Identified by similarity to GB:CAA91224.1; match to protein family HMM PF02178; match to protein family HMM PF02559.	RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	0.703
carQ	carB	MXAN_4088	MXAN_3388	RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	Carbamoyl-phosphate synthase, large subunit; Identified by similarity to SP:P38100; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369.	0.788
carQ	carD	MXAN_4088	MXAN_5622	RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	Transcriptional regulator CarD; Identified by similarity to GB:CAA91224.1; match to protein family HMM PF02178; match to protein family HMM PF02559.	0.703