8 items (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gspO	Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (335 aa)
	pilR	Pilin regulatory protein PilR; Identified by similarity to GB:AAB40881.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (478 aa)
	pilC	Type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAA25733.1; similarity to GB:AAT00616.1; match to protein family HMM PF00482. (417 aa)
	pilT-3	Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (372 aa)
	pilB	Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538. (566 aa)
	pilT-4	Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (369 aa)
	pilT-2	Twitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (491 aa)
	pilT	Twitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (364 aa)

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gspO	pilB	MXAN_5779	MXAN_5788	Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.	0.929
gspO	pilC	MXAN_5779	MXAN_5786	Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAA25733.1; similarity to GB:AAT00616.1; match to protein family HMM PF00482.	0.975
gspO	pilR	MXAN_5779	MXAN_5784	Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Pilin regulatory protein PilR; Identified by similarity to GB:AAB40881.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	0.623
gspO	pilT	MXAN_5779	MXAN_0415	Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Twitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.923
gspO	pilT-2	MXAN_5779	MXAN_1995	Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Twitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.923
gspO	pilT-3	MXAN_5779	MXAN_5787	Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.945
gspO	pilT-4	MXAN_5779	MXAN_6706	Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.924
pilB	gspO	MXAN_5788	MXAN_5779	Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.	Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.929
pilB	pilC	MXAN_5788	MXAN_5786	Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.	Type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAA25733.1; similarity to GB:AAT00616.1; match to protein family HMM PF00482.	0.997
pilB	pilR	MXAN_5788	MXAN_5784	Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.	Pilin regulatory protein PilR; Identified by similarity to GB:AAB40881.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	0.703
pilB	pilT	MXAN_5788	MXAN_0415	Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.	Twitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.534
pilB	pilT-2	MXAN_5788	MXAN_1995	Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.	Twitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.564
pilB	pilT-3	MXAN_5788	MXAN_5787	Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.	Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.843
pilB	pilT-4	MXAN_5788	MXAN_6706	Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.	Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.547
pilC	gspO	MXAN_5786	MXAN_5779	Type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAA25733.1; similarity to GB:AAT00616.1; match to protein family HMM PF00482.	Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.975
pilC	pilB	MXAN_5786	MXAN_5788	Type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAA25733.1; similarity to GB:AAT00616.1; match to protein family HMM PF00482.	Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.	0.997
pilC	pilR	MXAN_5786	MXAN_5784	Type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAA25733.1; similarity to GB:AAT00616.1; match to protein family HMM PF00482.	Pilin regulatory protein PilR; Identified by similarity to GB:AAB40881.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.	0.885
pilC	pilT	MXAN_5786	MXAN_0415	Type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAA25733.1; similarity to GB:AAT00616.1; match to protein family HMM PF00482.	Twitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.975
pilC	pilT-2	MXAN_5786	MXAN_1995	Type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAA25733.1; similarity to GB:AAT00616.1; match to protein family HMM PF00482.	Twitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.975
pilC	pilT-3	MXAN_5786	MXAN_5787	Type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAA25733.1; similarity to GB:AAT00616.1; match to protein family HMM PF00482.	Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.989