STRINGSTRING
tonB tonB gyrB gyrB pilT pilT tonB-2 tonB-2 pilT-2 pilT-2 cheW cheW cheW-2 cheW-2 rpoB rpoB cheW-3 cheW-3 cheA cheA gspO gspO pilT-3 pilT-3 tonB-3 tonB-3 pilT-4 pilT-4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tonBFerric siderophore transporter, periplasmic energy transduction protein TonB; Identified by similarity to GB:AAF04082.1; match to protein family HMM PF03544; match to protein family HMM TIGR01352. (269 aa)
gyrBDNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (815 aa)
pilTTwitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (364 aa)
tonB-2Ferric siderophore transporter, periplasmic energy transduction protein TonB; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. (266 aa)
pilT-2Twitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (491 aa)
cheWChemotaxis coupling protein CheW; Identified by similarity to GB:AAM52209.1; match to protein family HMM PF01584. (188 aa)
cheW-2Chemotaxis protein CheW; Identified by similarity to GB:AAM52213.1; match to protein family HMM PF01584. (194 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1408 aa)
cheW-3Chemotaxis protein CheW; Identified by similarity to SP:P07365; match to protein family HMM PF01584. (174 aa)
cheAChemotaxis protein CheA; Identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895. (862 aa)
gspOPrepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (335 aa)
pilT-3Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (372 aa)
tonB-3Ferric siderophore transporter, periplasmic energy transduction protein TonB; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. (268 aa)
pilT-4Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (369 aa)
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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