7 items (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	crtI	Phytoene desaturase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734. (517 aa)
	crtE	Geranylgeranyl diphosphate synthase; Identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. (297 aa)
	carQ	RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)
	rpoD	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (708 aa)
	carD	Transcriptional regulator CarD; Identified by similarity to GB:CAA91224.1; match to protein family HMM PF02178; match to protein family HMM PF02559. (316 aa)
	MXAN_0898	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143. (308 aa)
	crtB	Phytoene synthetase; Identified by similarity to GB:CAA79957.1; match to protein family HMM PF00494. (336 aa)

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0898	crtB	MXAN_0898	MXAN_0896	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Phytoene synthetase; Identified by similarity to GB:CAA79957.1; match to protein family HMM PF00494.	0.927
MXAN_0898	crtE	MXAN_0898	MXAN_4644	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Geranylgeranyl diphosphate synthase; Identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.	0.419
MXAN_0898	crtI	MXAN_0898	MXAN_0895	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Phytoene desaturase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	0.990
carD	carQ	MXAN_5622	MXAN_4088	Transcriptional regulator CarD; Identified by similarity to GB:CAA91224.1; match to protein family HMM PF02178; match to protein family HMM PF02559.	RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	0.703
carD	rpoD	MXAN_5622	MXAN_5204	Transcriptional regulator CarD; Identified by similarity to GB:CAA91224.1; match to protein family HMM PF02178; match to protein family HMM PF02559.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.716
carQ	carD	MXAN_4088	MXAN_5622	RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	Transcriptional regulator CarD; Identified by similarity to GB:CAA91224.1; match to protein family HMM PF02178; match to protein family HMM PF02559.	0.703
carQ	rpoD	MXAN_4088	MXAN_5204	RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.566
crtB	MXAN_0898	MXAN_0896	MXAN_0898	Phytoene synthetase; Identified by similarity to GB:CAA79957.1; match to protein family HMM PF00494.	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	0.927
crtB	crtE	MXAN_0896	MXAN_4644	Phytoene synthetase; Identified by similarity to GB:CAA79957.1; match to protein family HMM PF00494.	Geranylgeranyl diphosphate synthase; Identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.	0.985
crtB	crtI	MXAN_0896	MXAN_0895	Phytoene synthetase; Identified by similarity to GB:CAA79957.1; match to protein family HMM PF00494.	Phytoene desaturase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	0.999
crtE	MXAN_0898	MXAN_4644	MXAN_0898	Geranylgeranyl diphosphate synthase; Identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	0.419
crtE	crtB	MXAN_4644	MXAN_0896	Geranylgeranyl diphosphate synthase; Identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.	Phytoene synthetase; Identified by similarity to GB:CAA79957.1; match to protein family HMM PF00494.	0.985
crtE	crtI	MXAN_4644	MXAN_0895	Geranylgeranyl diphosphate synthase; Identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.	Phytoene desaturase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	0.849
crtI	MXAN_0898	MXAN_0895	MXAN_0898	Phytoene desaturase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	0.990
crtI	crtB	MXAN_0895	MXAN_0896	Phytoene desaturase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	Phytoene synthetase; Identified by similarity to GB:CAA79957.1; match to protein family HMM PF00494.	0.999
crtI	crtE	MXAN_0895	MXAN_4644	Phytoene desaturase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	Geranylgeranyl diphosphate synthase; Identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.	0.849
rpoD	carD	MXAN_5204	MXAN_5622	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Transcriptional regulator CarD; Identified by similarity to GB:CAA91224.1; match to protein family HMM PF02178; match to protein family HMM PF02559.	0.716
rpoD	carQ	MXAN_5204	MXAN_4088	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	RNA polymerase sigma factor CarQ; ECF subfamily; identified by similarity to SP:Q06909; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	0.566