12 items (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gspC	General secretion pathway protein C. (314 aa)
	MXAN_2902	Sigma-54 dependent transcriptional regulator, Fis family; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (599 aa)
	asgB	DNA-binding protein AsgB; Identified by similarity to GB:AAB59069.1. (163 aa)
	cglB	Adventurous gliding motility protein CglB; Identified by similarity to GB:AAB86642.1. (416 aa)
	rpoB	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1408 aa)
	rpoC	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1403 aa)
	rpoD	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (708 aa)
	sigC	RNA polymerase sigma-C factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (295 aa)
	MXAN_6547	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (669 aa)
	cmr4	CRISPR-associated RAMP protein Cmr4; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01867; match to protein family HMM TIGR02580. (317 aa)
	MXAN_0795	Conserved domain protein. (281 aa)
	asgA	A-signal transduction regulator AsgA; Identified by similarity to GB:AAB60170.1; match to protein family HMM PF00072; match to protein family HMM PF02518. (385 aa)

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0795	MXAN_6547	MXAN_0795	MXAN_6547	Conserved domain protein.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.805
MXAN_0795	gspC	MXAN_0795	MXAN_2515	Conserved domain protein.	General secretion pathway protein C.	0.541
MXAN_0795	rpoC	MXAN_0795	MXAN_3078	Conserved domain protein.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.516
MXAN_6547	MXAN_0795	MXAN_6547	MXAN_0795	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	Conserved domain protein.	0.805
MXAN_6547	gspC	MXAN_6547	MXAN_2515	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	General secretion pathway protein C.	0.541
MXAN_6547	rpoC	MXAN_6547	MXAN_3078	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.516
asgA	asgB	MXAN_2670	MXAN_2913	A-signal transduction regulator AsgA; Identified by similarity to GB:AAB60170.1; match to protein family HMM PF00072; match to protein family HMM PF02518.	DNA-binding protein AsgB; Identified by similarity to GB:AAB59069.1.	0.815
asgB	asgA	MXAN_2913	MXAN_2670	DNA-binding protein AsgB; Identified by similarity to GB:AAB59069.1.	A-signal transduction regulator AsgA; Identified by similarity to GB:AAB60170.1; match to protein family HMM PF00072; match to protein family HMM PF02518.	0.815
asgB	rpoB	MXAN_2913	MXAN_3077	DNA-binding protein AsgB; Identified by similarity to GB:AAB59069.1.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.673
asgB	rpoC	MXAN_2913	MXAN_3078	DNA-binding protein AsgB; Identified by similarity to GB:AAB59069.1.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.638
gspC	MXAN_0795	MXAN_2515	MXAN_0795	General secretion pathway protein C.	Conserved domain protein.	0.541
gspC	MXAN_6547	MXAN_2515	MXAN_6547	General secretion pathway protein C.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.541
rpoB	asgB	MXAN_3077	MXAN_2913	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-binding protein AsgB; Identified by similarity to GB:AAB59069.1.	0.673
rpoB	rpoC	MXAN_3077	MXAN_3078	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoD	MXAN_3077	MXAN_5204	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.978
rpoB	sigC	MXAN_3077	MXAN_6209	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase sigma-C factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.831
rpoC	MXAN_0795	MXAN_3078	MXAN_0795	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Conserved domain protein.	0.516
rpoC	MXAN_6547	MXAN_3078	MXAN_6547	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.516
rpoC	asgB	MXAN_3078	MXAN_2913	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-binding protein AsgB; Identified by similarity to GB:AAB59069.1.	0.638
rpoC	rpoB	MXAN_3078	MXAN_3077	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999