10 items (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MXAN_7033	Response regulator; Identified by match to protein family HMM PF00072. (134 aa)
	MXAN_0237	Hypothetical protein; Identified by Glimmer2; putative. (447 aa)
	MXAN_1499	ThiF domain protein; Identified by match to protein family HMM PF00899. (190 aa)
	MXAN_2969	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028. (379 aa)
	rpoB	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1408 aa)
	mvaS	hydroxymethylglutaryl-CoA synthase; Identified by similarity to GB:AAG02422.1; match to protein family HMM PF01154. (418 aa)
	dnaG	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (606 aa)
	MXAN_5317	Putative daunorubicin resistance ABC transporter, ATP-binding subunit; Identified by match to protein family HMM PF00005. (330 aa)
	MXAN_5799	Rhs family protein; Identified by match to protein family HMM PF01344; match to protein family HMM PF05593; match to protein family HMM PF07646; match to protein family HMM TIGR01643. (1798 aa)
	MXAN_5801	Di-haem cytochrome-c peroxidase; Identified by match to protein family HMM PF03150. (324 aa)

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_5799	MXAN_5801	MXAN_5799	MXAN_5801	Rhs family protein; Identified by match to protein family HMM PF01344; match to protein family HMM PF05593; match to protein family HMM PF07646; match to protein family HMM TIGR01643.	Di-haem cytochrome-c peroxidase; Identified by match to protein family HMM PF03150.	0.606
MXAN_5801	MXAN_5799	MXAN_5801	MXAN_5799	Di-haem cytochrome-c peroxidase; Identified by match to protein family HMM PF03150.	Rhs family protein; Identified by match to protein family HMM PF01344; match to protein family HMM PF05593; match to protein family HMM PF07646; match to protein family HMM TIGR01643.	0.606
dnaG	rpoB	MXAN_5203	MXAN_3077	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.601
rpoB	dnaG	MXAN_3077	MXAN_5203	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.601