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| | fabI-1 | Enoyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P29132; match to protein family HMM PF00106. (254 aa) |
| | SPO0115 | maoC family protein/phosphate acetyl/butaryl transferase; Identified by match to protein family HMM PF01515; match to protein family HMM PF01575. (464 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (394 aa) |
| | SPO0128 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (251 aa) |
| | bktB | Beta-ketothiolase; Identified by similarity to GB:AAC38322.1; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa) |
| | SPO0147 | enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa) |
| | plsY | Putative protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. (203 aa) |
| | SPO0316 | Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone. (548 aa) |
| | phbB | acetoacetyl-CoA reductase; Identified by similarity to SP:P23238; match to protein family HMM PF00106; match to protein family HMM TIGR01829. (240 aa) |
| | phbA | acetyl-CoA acetyltransferase; Identified by similarity to SP:P54810; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa) |
| | SPO0339 | Identified by match to protein family HMM PF01553. (243 aa) |
| | SPO0369 | Acyltransferase family protein; Identified by similarity to SP:P00482; match to protein family HMM PF01553. (527 aa) |
| | acdA-1 | acyl-CoA dehydrogenase. (385 aa) |
| | SPO0576 | Transcriptional regulator, TetR family; Identified by similarity to GB:AAS05297.1. (209 aa) |
| | SPO0577 | Hypothetical protein; Identified by similarity to PIR:D83286. (587 aa) |
| | SPO0578 | acetyl-CoA carboxylase carboxyltransferase; Identified by similarity to GB:BAB16296.1. (539 aa) |
| | SPO0579 | acetyl-CoA carboxylase, biotin carboxylase, putative; Identified by similarity to GB:BAB16297.1. (660 aa) |
| | SPO0580 | Oxidoreductase, 2-nitropropane dioxygenase family. (376 aa) |
| | SPO0581 | Hypothetical protein; Identified by similarity to GB:CAB95889.1. (263 aa) |
| | acdA-2 | acyl-CoA dehydrogenase. (385 aa) |
| | SPO0586 | Acyl-carrier domain protein; Identified by similarity to PIR:T00580. (345 aa) |
| | SPO0666 | enoyl-CoA hydratase/isomerase family protein. (267 aa) |
| | SPO0677 | AMP-binding protein. (542 aa) |
| | bhbD | 3-hydroxybutyryl-CoA dehydrogenase; Identified by similarity to SP:P52041. (291 aa) |
| | etfA | Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974. (309 aa) |
| | etfB | Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:P38975. (252 aa) |
| | SPO0734 | PaaX domain protein; Identified by similarity to SP:P76086. (266 aa) |
| | paaZ | Phenylacetic acid degradation protein PaaZ; Identified by similarity to SP:P77455; match to protein family HMM PF00171; match to protein family HMM PF01575. (673 aa) |
| | SPO0739 | enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. (681 aa) |
| | paaB | enoyl-CoA hydratase/isomerase PaaB; Identified by similarity to SP:P77467; match to protein family HMM PF00378. (261 aa) |
| | paaD | Phenylacetic acid degradation protein PaaD; Identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369. (142 aa) |
| | paaF | phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (436 aa) |
| | SPO0743 | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (198 aa) |
| | SPO0752 | Phenylacetic acid degradation protein, putative. (252 aa) |
| | paaK | Phenylacetic acid degradation oxidoreductase PaaK; Identified by similarity to SP:P76081; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160. (357 aa) |
| | paaJ | Phenylacetic acid degradation protein PaaJ; Identified by similarity to SP:P76080; match to protein family HMM PF01883; match to protein family HMM TIGR02159. (153 aa) |
| | paaI | Phenylacetic acid degradation protein PaaI; Identified by similarity to SP:P76079; match to protein family HMM PF05138; match to protein family HMM TIGR02158. (253 aa) |
| | paaH | Phenylacetic acid degradation protein PaaH; Identified by similarity to SP:P76078; match to protein family HMM PF06243; match to protein family HMM TIGR02157. (94 aa) |
| | paaG | Phenylacetic acid degradation protein PaaG; Identified by similarity to GB:AAC24334.1; match to protein family HMM PF05138; match to protein family HMM TIGR02156. (330 aa) |
| | SPO0758 | Beta-ketoadipyl CoA thiolase; Identified by similarity to SP:Q51956; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa) |
| | SPO0759 | Hypothetical protein; Identified by Glimmer2; putative. (107 aa) |
| | SPO0760 | 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (131 aa) |
| | SPO0761 | Identified by match to protein family HMM PF04199; match to protein family HMM TIGR01409. (272 aa) |
| | SPO0772 | enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family. (698 aa) |
| | SPO0773 | Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa) |
| | SPO0774 | Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (396 aa) |
| | SPO0775 | Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (375 aa) |
| | SPO0776 | Putative protein TIGR00369; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. (141 aa) |
| | SPO0777 | Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (255 aa) |
| | SPO0778 | long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501. (496 aa) |
| | SPO0792 | 6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446; match to protein family HMM TIGR00872; match to protein family HMM TIGR00873. (290 aa) |
| | SPO0800 | Choline sulfatase, putative; Identified by similarity to GB:AAC13371.1; match to protein family HMM PF00884. (482 aa) |
| | fadD | 4-coumarate:CoA ligase; Identified by similarity to PIR:T08074; match to protein family HMM PF00501. (535 aa) |
| | SPO0879 | Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (411 aa) |
| | accC | acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (449 aa) |
| | accB | acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (164 aa) |
| | SPO1012 | Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196. (178 aa) |
| | SPO1013 | Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family. (386 aa) |
| | SPO1014 | AMP-binding enzyme; Identified by match to protein family HMM PF00501. (502 aa) |
| | SPO1015 | 3-hydroxybutyrate dehydrogenase, putative; Identified by similarity to SP:O86034; match to protein family HMM PF00106. (267 aa) |
| | pccB | propionyl-CoA carboxylase, beta subunit; Identified by similarity to PIR:T42208; match to protein family HMM PF01039. (510 aa) |
| | pccA | propionyl-CoA carboxylase, alpha subunit; This is one of the 2 subunits of the biotin-dependent propionyl-CoA carboxylase (PCC), the enzyme catalyzing the carboxylation of propionyl-CoA/propanoyl-CoA to D-methylmalonyl- CoA/(S)-methylmalonyl-CoA. Within the holoenzyme, the alpha subunit catalyzes the ATP-dependent carboxylation of the biotin carried by the biotin carboxyl carrier (BCC) domain, while the beta subunit then tranfers the carboxyl group from carboxylated biotin to propionyl-CoA (Probable). (681 aa) |
| | SPO1467 | Identified by match to protein family HMM PF00725; match to protein family HMM PF02737. (327 aa) |
| | SPO1687 | Identified by similarity to SP:P52046; match to protein family HMM PF00378. (261 aa) |
| | acs | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (654 aa) |
| | SPO1882 | Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa) |
| | acuI | NADPH-dependent acrylyl-CoA reductase; Probably catalyzes the NADPH-dependent reduction of acrylyl- CoA to propanoyl-CoA. Restores acrylate resistance when expressed in an E.coli strain K12 acuI deletion. (330 aa) |
| | SPO1931 | Acyl carrier protein, putative; Identified by similarity to SP:P20804; match to protein family HMM PF00550. (85 aa) |
| | SPO1932 | Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (402 aa) |
| | gcdH | glutaryl-CoA dehydrogenase; Identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771. (408 aa) |
| | SPO1957 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by similarity to GB:AAR05249.1; match to protein family HMM PF00106. (256 aa) |
| | SPO1958 | acyl-CoA thioesterase II; Identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189. (289 aa) |
| | SPO1959 | acetoacetyl-CoA synthase; Identified by similarity to SP:Q9Z3R3; match to protein family HMM PF00501; match to protein family HMM TIGR01217. (653 aa) |
| | SPO1960 | Beta-lactamase; Identified by match to protein family HMM PF00144. (411 aa) |
| | SPO1961 | Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614. (256 aa) |
| | SPO1962 | Identified by match to protein family HMM PF01636. (342 aa) |
| | SPO1963 | Identified by match to protein family HMM PF00300. (216 aa) |
| | SPO1964 | Hypothetical protein; Identified by similarity to GB:AAL02322.2. (333 aa) |
| | SPO1965 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (309 aa) |
| | SPO1966 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (272 aa) |
| | SPO1967 | acyl-CoA dehydrogenase, putative; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771. (371 aa) |
| | SPO1968 | Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (385 aa) |
| | SPO1969 | Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107. (330 aa) |
| | SPO1970 | Identified by match to protein family HMM PF00300. (218 aa) |
| | SPO1971 | Identified by match to protein family HMM PF00378. (274 aa) |
| | SPO1972 | Nodulation protein N; Identified by similarity to SP:P25200; match to protein family HMM PF01575. (162 aa) |
| | bdh-1 | D-beta-hydroxybutyrate dehydrogenase; Identified by similarity to SP:O86034; match to protein family HMM PF00106; match to protein family HMM TIGR01963. (257 aa) |
| | fabI-2 | Enoyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P29132; match to protein family HMM PF00106. (268 aa) |
| | mmsA | Methylmalonate-semialdehyde dehydrogenase; Identified by similarity to SP:P28810; match to protein family HMM PF00171; match to protein family HMM TIGR01722. (499 aa) |
| | SPO2211 | acyl-CoA dehydrogenase; Identified by similarity to SP:Q9UKU7; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771. (380 aa) |
| | SPO2212 | Identified by match to protein family HMM PF00378. (348 aa) |
| | mmsB-1 | 3-hydroxyisobutyrate dehydrogenase; Identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM TIGR01692; Belongs to the HIBADH-related family. (290 aa) |
| | SPO2213a | Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG010; similar gene identified in less than 5 other Roseobacter strains'. (130 aa) |
| | fabF | 3-oxoacyl-(acyl carrier protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (421 aa) |
| | acpP | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. (77 aa) |
| | fabG | 3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa) |
| | fabD | Malonyl CoA-acyl carrier protein transacylase; Identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128. (312 aa) |
| | SPO2339 | Identified by match to protein family HMM PF00378. (253 aa) |
| | SPO2380 | acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771. (388 aa) |
| | SPO2451 | Acyltransferase, putative; Identified by match to protein family HMM PF01553. (254 aa) |
| | plsX | Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA. (371 aa) |
| | fabH-2 | 3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family. (323 aa) |
| | SPO2538 | acyl-CoA dehydrogenase famiy protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (413 aa) |
| | SPO2540 | Carbamoyl-phosphate synthase, putative; Identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786. (456 aa) |
| | SPO2541 | propionyl-CoA carboxylase, putative; Identified by similarity to GB:AAD28194.1; match to protein family HMM PF01039. (518 aa) |
| | SPO2542 | Biotin/lipoate binding domain protein; Identified by match to protein family HMM PF00364. (75 aa) |
| | SPO2548 | Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107. (330 aa) |
| | SPO2549 | Identified by match to protein family HMM PF01636. (343 aa) |
| | SPO2678 | Hypothetical protein; Identified by Glimmer2; putative. (82 aa) |
| | SPO2679 | Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (214 aa) |
| | SPO2692 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (259 aa) |
| | SPO2697 | acyl-CoA synthetase, putative; Identified by similarity to GB:AAN69320.1; similarity to GB:BAC79255.1; match to protein family HMM PF02629. (697 aa) |
| | SPO2698 | Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (386 aa) |
| | SPO2787 | Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (262 aa) |
| | mvaB | hydroxymethylglutaryl-CoA lyase; Identified by similarity to SP:P13703; match to protein family HMM PF00682. (284 aa) |
| | mccA | methylcrotonyl-CoA carboxylase, alpha subunit; Identified by similarity to SP:Q96RQ3; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786. (645 aa) |
| | mccB | methylcrotonyl-CoA carboxylase, beta subunit; Identified by similarity to SP:Q9HCC0; match to protein family HMM PF01039. (534 aa) |
| | acsA | Acetyl-coenzyme A synthetase; Identified by similarity to SP:P39062; match to protein family HMM PF00501. (510 aa) |
| | ivD | isovaleryl-CoA dehydrogenase; Identified by similarity to SP:P26440; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771. (387 aa) |
| | bdh-2 | D-beta-hydroxybutyrate dehydrogenase; Identified by similarity to SP:O86034; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (250 aa) |
| | SPO2842 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (246 aa) |
| | SPO2843 | Hypothetical protein; Identified by Glimmer2; putative. (159 aa) |
| | SPO2859 | 3-hydroxyisobutyrate dehydrogenase family protein; Identified by similarity to SP:P23523. (320 aa) |
| | SPO2915 | Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (593 aa) |
| | SPO2918 | acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa) |
| | fabJ-1 | Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. (733 aa) |
| | prpE | propionate--CoA ligase; Identified by similarity to SP:P77495; match to protein family HMM PF00501. (629 aa) |
| | SPO3025 | Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa) |
| | dxnG | 3-oxoadipate CoA-succinyl transferase, alpha subunit; Identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144. (234 aa) |
| | dxnH | 3-oxoadipate CoA-succinyl transferase, beta subunit; Identified by similarity to GB:CAA51373.1; match to protein family HMM PF01144. (208 aa) |
| | SPO3368 | Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (777 aa) |
| | SPO3369 | Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (270 aa) |
| | SPO3382 | Identified by match to protein family HMM PF00171. (479 aa) |
| | SPO3408 | acetyl-CoA C-acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa) |
| | pta | Phosphate acetyltransferase; Identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651; PMID: 16541231. (337 aa) |
| | xsc | Sulfoacetaldehyde acetyltransferase; Identified by similarity to SP:Q84H44; match to protein family HMM PF00205; match to protein family HMM PF02776; PMID: 16541231; Belongs to the TPP enzyme family. (596 aa) |
| | SPO3593 | Identified by match to protein family HMM PF00884. (552 aa) |
| | accA | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (320 aa) |
| | SPO3646 | Identified by match to protein family HMM PF00378. (309 aa) |
| | SPO3654 | 7-alpha-hydroxysteroid dehydrogenase, putative; Identified by similarity to SP:P25529; match to protein family HMM PF00106. (266 aa) |
| | accD | acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (314 aa) |
| | SPO3900 | Identified by match to protein family HMM PF00565. (188 aa) |
