STRINGSTRING
bktB bktB SPO0147 SPO0147 SPO0316 SPO0316 phbB phbB phbA phbA SPO0677 SPO0677 bhbD bhbD etfA etfA etfB etfB SPO0739 SPO0739 SPO0758 SPO0758 SPO0772 SPO0772 SPO0773 SPO0773 SPO0774 SPO0774 SPO0775 SPO0775 SPO0776 SPO0776 SPO0777 SPO0777 SPO0778 SPO0778 SPO1467 SPO1467 SPO1687 SPO1687 gcdH gcdH SPO1959 SPO1959 SPO2339 SPO2339 SPO2380 SPO2380 SPO2540 SPO2540 SPO2541 SPO2541 SPO2698 SPO2698 SPO2787 SPO2787 mvaB mvaB mccA mccA mccB mccB ivD ivD SPO2915 SPO2915 SPO2918 SPO2918 fabJ-1 fabJ-1 SPO3025 SPO3025 dxnG dxnG dxnH dxnH SPO3408 SPO3408 SPO3646 SPO3646 SPO3900 SPO3900
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
bktBBeta-ketothiolase; Identified by similarity to GB:AAC38322.1; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
SPO0147enoyl-CoA hydratase; Identified by similarity to SP:P14604; match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
SPO0316Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone. (548 aa)
phbBacetoacetyl-CoA reductase; Identified by similarity to SP:P23238; match to protein family HMM PF00106; match to protein family HMM TIGR01829. (240 aa)
phbAacetyl-CoA acetyltransferase; Identified by similarity to SP:P54810; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
SPO0677AMP-binding protein. (542 aa)
bhbD3-hydroxybutyryl-CoA dehydrogenase; Identified by similarity to SP:P52041. (291 aa)
etfAElectron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974. (309 aa)
etfBElectron transfer flavoprotein, beta subunit; Identified by similarity to SP:P38975. (252 aa)
SPO0739enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. (681 aa)
SPO0758Beta-ketoadipyl CoA thiolase; Identified by similarity to SP:Q51956; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
SPO0772enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family. (698 aa)
SPO0773Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
SPO0774Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (396 aa)
SPO0775Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (375 aa)
SPO0776Putative protein TIGR00369; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. (141 aa)
SPO0777Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (255 aa)
SPO0778long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501. (496 aa)
SPO1467Identified by match to protein family HMM PF00725; match to protein family HMM PF02737. (327 aa)
SPO1687Identified by similarity to SP:P52046; match to protein family HMM PF00378. (261 aa)
gcdHglutaryl-CoA dehydrogenase; Identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771. (408 aa)
SPO1959acetoacetyl-CoA synthase; Identified by similarity to SP:Q9Z3R3; match to protein family HMM PF00501; match to protein family HMM TIGR01217. (653 aa)
SPO2339Identified by match to protein family HMM PF00378. (253 aa)
SPO2380acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771. (388 aa)
SPO2540Carbamoyl-phosphate synthase, putative; Identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786. (456 aa)
SPO2541propionyl-CoA carboxylase, putative; Identified by similarity to GB:AAD28194.1; match to protein family HMM PF01039. (518 aa)
SPO2698Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (386 aa)
SPO2787Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (262 aa)
mvaBhydroxymethylglutaryl-CoA lyase; Identified by similarity to SP:P13703; match to protein family HMM PF00682. (284 aa)
mccAmethylcrotonyl-CoA carboxylase, alpha subunit; Identified by similarity to SP:Q96RQ3; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786. (645 aa)
mccBmethylcrotonyl-CoA carboxylase, beta subunit; Identified by similarity to SP:Q9HCC0; match to protein family HMM PF01039. (534 aa)
ivDisovaleryl-CoA dehydrogenase; Identified by similarity to SP:P26440; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771. (387 aa)
SPO2915Identified by match to protein family HMM PF00441; match to protein family HMM PF02770. (593 aa)
SPO2918acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa)
fabJ-1Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. (733 aa)
SPO3025Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
dxnG3-oxoadipate CoA-succinyl transferase, alpha subunit; Identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144. (234 aa)
dxnH3-oxoadipate CoA-succinyl transferase, beta subunit; Identified by similarity to GB:CAA51373.1; match to protein family HMM PF01144. (208 aa)
SPO3408acetyl-CoA C-acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
SPO3646Identified by match to protein family HMM PF00378. (309 aa)
SPO3900Identified by match to protein family HMM PF00565. (188 aa)
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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