STRINGSTRING
SPO1343 SPO1343 SPO3896 SPO3896 SPO3841 SPO3841 folC folC SPO3764 SPO3764 SPO3681 SPO3681 SPO3678 SPO3678 gshA gshA SPO3545 SPO3545 glyA-3 glyA-3 SPO3494 SPO3494 SPO3486 SPO3486 SPO3435 SPO3435 SPO3411 SPO3411 SPO3388 SPO3388 SPO3368 SPO3368 gabD-2 gabD-2 SPO3306 SPO3306 SPO3299 SPO3299 SPO3261 SPO3261 SPO3222 SPO3222 SPO3208 SPO3208 folK folK SPO3191 SPO3191 SPO3173 SPO3173 fhs-2 fhs-2 SPO3101 SPO3101 SPO3080 SPO3080 metF metF SPO2954 SPO2954 glyA-2 glyA-2 SPO2917 SPO2917 SPO2905 SPO2905 SPO2902 SPO2902 SPO2708 SPO2708 SPO2705 SPO2705 SPO2703 SPO2703 SPO2576 SPO2576 iseJ iseJ SPO2346 SPO2346 SPO2345 SPO2345 SPO2344 SPO2344 SPO2209 SPO2209 SPO2163 SPO2163 SPO2059 SPO2059 SPO2004 SPO2004 SPO1946 SPO1946 SPO1902 SPO1902 SPO1862 SPO1862 SPO1853 SPO1853 SPO1780 SPO1780 SPO1747 SPO1747 SPO1746 SPO1746 SPO1745 SPO1745 SPO1736 SPO1736 panE-2 panE-2 SPO1590 SPO1590 SPO1587 SPO1587 SPO1586 SPO1586 SPO1585 SPO1585 glyA-1 glyA-1 folD folD folD1 folD1 fhs-1 fhs-1 SPO1484 SPO1484 SPO1467 SPO1467 lcdH lcdH SPO1435 SPO1435 SPO1400 SPO1400 folP folP SPO1362 SPO1362 SPO1324 SPO1324 SPO1257 SPO1257 gst gst doeC doeC betA betA betI-2 betI-2 betI betI SPO1030 SPO1030 SPO1027 SPO1027 SPO0971 SPO0971 panE-1 panE-1 SPO0953 SPO0953 SPO0866 SPO0866 SPO0836 SPO0836 SPO0799 SPO0799 SPO0743 SPO0743 hmgC hmgC ggt ggt SPO0606 SPO0606 SPO0576 SPO0576 SPO0563 SPO0563 SPO0431 SPO0431 SPO0403 SPO0403 gshB gshB SPO0270 SPO0270 aasadh aasadh SPO0190 SPO0190 SPO0153 SPO0153 panC panC panB panB SPO0097 SPO0097 betB betB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SPO1343Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. (213 aa)
SPO3896Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (203 aa)
SPO3841Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (205 aa)
folCfolC bifunctional protein; Identified by match to protein family HMM PF01225; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family. (424 aa)
SPO3764Identified by match to protein family HMM PF02798. (221 aa)
SPO3681Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355. (380 aa)
SPO3678Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355. (369 aa)
gshAGlutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily. (456 aa)
SPO3545Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (185 aa)
glyA-3Serine hydroxymethyltransferase; Identified by match to protein family HMM PF00464. (431 aa)
SPO3494Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily. (233 aa)
SPO3486Hypothetical protein; Identified by similarity to PIR:B83165. (232 aa)
SPO3435Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. (197 aa)
SPO3411Gamma-glutamyltranspeptidase, putative; Identified by match to protein family HMM PF01019. (525 aa)
SPO3388Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (207 aa)
SPO3368Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (777 aa)
gabD-2Succinate-semialdehyde dehydrogenase; Identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780; Belongs to the aldehyde dehydrogenase family. (503 aa)
SPO3306Glutathione S-transferase, putative; Identified by similarity to GB:AAC44159.1; match to protein family HMM PF00043; match to protein family HMM PF02798. (204 aa)
SPO3299Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (194 aa)
SPO3261Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. (222 aa)
SPO3222Hypothetical protein; Identified by similarity to PIR:T45023. (329 aa)
SPO3208Identified by match to protein family HMM PF00043. (209 aa)
folK2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498. (188 aa)
SPO3191Identified by match to protein family HMM PF00171. (483 aa)
SPO3173Cation transport protein ChaC, putative; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. (177 aa)
fhs-2Formate--tetrahydrofolate ligase; Identified by similarity to SP:Q59925; match to protein family HMM PF01268. (558 aa)
SPO3101folD bifunctional protein; Identified by similarity to SP:P54382; match to protein family HMM PF00763; match to protein family HMM PF02882. (296 aa)
SPO3080Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (193 aa)
metF5,10-methylenetetrahydrofolate reductase; Identified by similarity to SP:P00394; match to protein family HMM PF02219; match to protein family HMM TIGR00676; Belongs to the methylenetetrahydrofolate reductase family. (307 aa)
SPO2954Identified by match to protein family HMM PF01812; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. (185 aa)
glyA-2Serine hydroxymethyltransferase; Identified by similarity to SP:P50435; match to protein family HMM PF00464. (431 aa)
SPO2917Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily. (212 aa)
SPO2905Hypothetical protein; Identified by similarity to GB:CAC45122.1; match to protein family HMM PF06108. (112 aa)
SPO2902Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. (209 aa)
SPO2708Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (493 aa)
SPO2705Identified by match to protein family HMM PF00725; match to protein family HMM PF02737. (317 aa)
SPO2703Hypothetical protein; Identified by similarity to PIR:G82972; match to protein family HMM PF05853. (296 aa)
SPO2576Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (205 aa)
iseJIsethionate dehydrogenase; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199; PMID: 19933343. (535 aa)
SPO2346Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267. (109 aa)
SPO2345Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family. (1010 aa)
SPO2344Sarcosine oxidase, gamma subunit family; Identified by similarity to SP:Q46338; match to protein family HMM PF04268. (188 aa)
SPO2209Glutamate--cysteine ligase family protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. (384 aa)
SPO2163Hypothetical protein; Identified by similarity to PIR:AC3193. (209 aa)
SPO2059Identified by match to protein family HMM PF02798. (280 aa)
SPO2004Hypothetical protein; Identified by similarity to GB:BAB47761.1; match to protein family HMM PF05853. (308 aa)
SPO1946Identified by match to protein family HMM PF00132. (174 aa)
SPO1902Transcription regulator, TetR family; Identified by match to protein family HMM PF00440. (191 aa)
SPO1862metFprotein-like protein; Identified by similarity to PIR:B97532. (309 aa)
SPO1853Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (213 aa)
SPO1780Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (205 aa)
SPO1747Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268. (189 aa)
SPO1746Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family. (977 aa)
SPO1745Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267. (87 aa)
SPO1736Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (194 aa)
panE-22-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (311 aa)
SPO1590Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355. (363 aa)
SPO1587Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267. (95 aa)
SPO1586Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family. (983 aa)
SPO1585Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268; match to protein family HMM TIGR01375. (186 aa)
glyA-1Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (431 aa)
folDfolD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (292 aa)
folD1folD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (296 aa)
fhs-1Formate--tetrahydrofolate ligase; Identified by similarity to SP:Q59925; match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family. (558 aa)
SPO1484Hypothetical protein; Identified by similarity to GB:AAO56021.1. (164 aa)
SPO1467Identified by match to protein family HMM PF00725; match to protein family HMM PF02737. (327 aa)
lcdH3-hydroxyacyl-CoA dehydrogenase family protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. (487 aa)
SPO1435Identified by match to protein family HMM PF05853. (301 aa)
SPO1400Identified by match to protein family HMM PF05853. (252 aa)
folPDihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives. (264 aa)
SPO1362Dihydroneopterin aldolase, putative; Identified by match to protein family HMM TIGR00526. (306 aa)
SPO1324Identified by match to protein family HMM PF02798. (233 aa)
SPO1257Identified by match to protein family HMM PF02798; Belongs to the GST superfamily. (203 aa)
gstGlutathione S-transferase; Identified by similarity to SP:P39100; match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily. (204 aa)
doeCAspartate-semialdehyde dehydrogenase; Identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780. (491 aa)
betACholine dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (552 aa)
betI-2Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. (193 aa)
betIHTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes. (192 aa)
SPO1030Identified by match to protein family HMM PF00753. (305 aa)
SPO1027Putative protein TIGR01244; Identified by similarity to PIR:T10511; match to protein family HMM PF04273; match to protein family HMM TIGR01244. (143 aa)
SPO0971Oxidoreductase, GMC family; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199. (534 aa)
panE-12-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (331 aa)
SPO0953Hypothetical protein; Identified by similarity to GB:BAB49280.1. (292 aa)
SPO0866Gamma-glutamyltranspeptidase, putative; Identified by match to protein family HMM PF01019. (596 aa)
SPO0836Hypothetical protein; Identified by similarity to GB:BAB48851.1. (171 aa)
SPO0799Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (220 aa)
SPO0743Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (198 aa)
hmgCMaleylacetoacetate isomerase; Identified by similarity to SP:O43708. (213 aa)
ggtGamma-glutamyltranspeptidase; Identified by similarity to SP:P54422. (597 aa)
SPO0606Hypothetical protein; Identified by similarity to PIR:C95874. (562 aa)
SPO0576Transcriptional regulator, TetR family; Identified by similarity to GB:AAS05297.1. (209 aa)
SPO0563Glutathione S-transferase, putative; Identified by similarity to SP:Q12390. (209 aa)
SPO0431Hypothetical protein; Identified by similarity to PIR:E82090. (189 aa)
SPO0403Hypothetical protein; Identified by similarity to GB:CAD13614.1. (291 aa)
gshBGlutathione synthetase; Identified by similarity to SP:P04425; match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family. (310 aa)
SPO0270Identified by match to protein family HMM PF02798. (203 aa)
aasadhAlpha-aminoadipic semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (504 aa)
SPO0190Oxidoreductase, GMC family; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199. (537 aa)
SPO0153Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (195 aa)
panCPantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (285 aa)
panB3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. (279 aa)
SPO0097Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (483 aa)
betBBetaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. (484 aa)
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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