STRINGSTRING
speB-3 speB-3 speB-1 speB-1 SPO0678 SPO0678 allA allA SPO0876 SPO0876 SPO1039 SPO1039 SPO1781 SPO1781 rocF rocF hutG hutG speB-2 speB-2 SPO2556 SPO2556 SPO2980 SPO2980 SPO3304 SPO3304
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
speB-3Agmatinase; Identified by similarity to SP:P16936; match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family. (327 aa)
speB-1Agmatinase; Belongs to the arginase family. (282 aa)
SPO0678Agmatinase, putative; Identified by similarity to SP:Q9BSE5; Belongs to the arginase family. (319 aa)
allAUreidoglycolate hydrolase; Identified by similarity to SP:P77731; match to protein family HMM PF04115. (162 aa)
SPO0876Hypothetical protein; Identified by similarity to GB:BAB51632.1; match to protein family HMM PF06038. (275 aa)
SPO1039Hypothetical protein; Identified by similarity to GB:CAE33998.1. (460 aa)
SPO1781Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879. (416 aa)
rocFArginase; Identified by similarity to SP:Q59174; match to protein family HMM PF00491; match to protein family HMM TIGR01229; Belongs to the arginase family. (337 aa)
hutGN-formylglutamate amidohydrolase; Identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017. (271 aa)
speB-2Agmatinase; Identified by similarity to SP:Q9BSE5; match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family. (315 aa)
SPO2556N-carbamyl-L-amino acid amidohydrolase, putative; Identified by similarity to SP:P37113; match to protein family HMM PF01546; match to protein family HMM TIGR01879. (409 aa)
SPO2980Porphyromonas-type peptidyl-arginine deiminase family protein; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family. (338 aa)
SPO3304Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879. (394 aa)
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.