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SPO0221 SPO0221 SPO0130 SPO0130 SPO0256 SPO0256 petA petA petB petB petC petC SPO0275 SPO0275 SPO0316 SPO0316 ccpA ccpA sdhC sdhC sdhA sdhA sdhB sdhB azoR azoR SPO0482 SPO0482 SPO0524 SPO0524 SPO0568 SPO0568 etfA etfA etfB etfB SPO0766 SPO0766 SPO0834 SPO0834 SPO0858 SPO0858 SPO0869 SPO0869 SPO0901 SPO0901 soxX soxX soxA soxA soxD soxD soxE soxE SPO1125 SPO1125 SPO1126 SPO1126 SPO1127 SPO1127 SPO1348 SPO1348 ctaD ctaD SPO1419 SPO1419 SPO1459 SPO1459 SPO1460 SPO1460 SPO1469 SPO1469 SPO1509 SPO1509 SPO1512 SPO1512 SPO1515 SPO1515 SPO1556 SPO1556 SPO1794 SPO1794 SPO1796 SPO1796 SPO1801 SPO1801 SPO1845 SPO1845 SPO1873 SPO1873 cycF cycF cycG cycG SPO2277 SPO2277 SPO2377 SPO2377 SPO2389 SPO2389 SPO2577 SPO2577 SPO2694 SPO2694 nuoN nuoN nuoM nuoM nuoL nuoL nuoK nuoK nuoJ nuoJ nuoG nuoG nuoF nuoF nuoD nuoD nuoC nuoC nuoB nuoB nuoA nuoA phaD phaD SPO2989 SPO2989 ctaE ctaE ctaC ctaC SPO3183 SPO3183 msrQ msrQ SPO3356 SPO3356 ccoP-1 ccoP-1 ccoO-1 ccoO-1 ccoN-1 ccoN-1 cycM cycM soeC soeC soeA soeA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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SPO0221Hypothetical protein; Identified by similarity to GB:CAE38612.1. (161 aa)
SPO0130Identified by match to protein family HMM PF00034. (137 aa)
SPO0256Copper-binding protein, plastocyanin/azurin family; Identified by match to protein family HMM PF00127. (109 aa)
petAUbiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (187 aa)
petBUbiquinol--cytochrome c reductase, cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (442 aa)
petCUbiquinol--cytochrome c reductase, cytochrome c1; Identified by similarity to SP:Q02760; match to protein family HMM PF02167. (287 aa)
SPO0275Cytochrome b, putative; Identified by match to protein family HMM PF01292. (188 aa)
SPO0316Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone. (548 aa)
ccpACytochrome c peroxidase; Identified by similarity to SP:P14532; match to protein family HMM PF03150. (349 aa)
sdhCSuccinate dehydrogenase, cytochrome b556 subunit; Identified by match to protein family HMM PF01127. (128 aa)
sdhASuccinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P31038; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (601 aa)
sdhBSuccinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM TIGR00384; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa)
azoRAcyl carrier protein phosphodiesterase, putative; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (204 aa)
SPO0482NADH-ubiquinone oxidoreductase family protein. (103 aa)
SPO0524Hypothetical protein; Identified by similarity to GB:BAB48651.1. (211 aa)
SPO0568Pyruvate ferredoxin/flavodoxin oxidoreductase family protein. (1137 aa)
etfAElectron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974. (309 aa)
etfBElectron transfer flavoprotein, beta subunit; Identified by similarity to SP:P38975. (252 aa)
SPO0766Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111. (104 aa)
SPO0834Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (925 aa)
SPO0858Methylamine utilization protein MauG, putative; Identified by similarity to SP:Q49128. (432 aa)
SPO0869Membrane protein, putative; Identified by match to protein family HMM PF00034; match to protein family HMM PF06181. (409 aa)
SPO0901Adenylate/guanylate cyclase; Identified by match to protein family HMM PF00111; match to protein family HMM PF00211. (565 aa)
soxXMonoheme cytochrome c SoxX; Identified by similarity to GB:CAB94379.1; match to protein family HMM PF00034. (161 aa)
soxADiheme cytochrome c SoxA; Identified by similarity to GB:AAF99434.1. (283 aa)
soxDDiheme cytochrome c SoxD; Identified by similarity to PIR:T46966; match to protein family HMM PF00034. (347 aa)
soxEDiheme cytochrome c SoxE; Identified by match to protein family HMM PF00034. (236 aa)
SPO1125Hypothetical protein; Identified by Glimmer2; putative. (151 aa)
SPO1126Cytochrome c family protein. (130 aa)
SPO1127Identified by match to protein family HMM PF00034. (135 aa)
SPO1348Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111. (107 aa)
ctaDCytochrome c oxidase, aa3-type, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (552 aa)
SPO1419Iron-sulfur cluster-binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (112 aa)
SPO1459Indolepyruvate oxidoreductase, IorA subunit, putative; Identified by similarity to SP:O07835; match to protein family HMM PF02775. (715 aa)
SPO1460Indolepyruvate oxidoreductase, IorB subunit, putative. (517 aa)
SPO14693-ketosteroid dehydrogenase, putative; Identified by similarity to GB:AAF19054.1; match to protein family HMM PF00890. (462 aa)
SPO1509Identified by match to protein family HMM PF00034. (135 aa)
SPO1512Hypothetical protein; Identified by similarity to PIR:D95864. (148 aa)
SPO1515Cytochrome c550, putative; Identified by similarity to GB:AAC79658.1. (224 aa)
SPO1556Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (926 aa)
SPO1794Formate dehydrogenase, gamma subunit; Identified by match to protein family HMM TIGR01583. (393 aa)
SPO1796Formate dehydrogenase, alpha subunit, putative; Identified by similarity to PIR:S18213; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (964 aa)
SPO1801Hypothetical protein; Identified by similarity to SP:P24059. (242 aa)
SPO1845Oxidoreductase, molybdopterin-binding protein; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (700 aa)
SPO1873Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558; match to protein family HMM PF02775. (1139 aa)
cycFCytochrome c-554; Identified by similarity to SP:Q53142; match to protein family HMM PF01322. (158 aa)
cycGDiheme cytochrome c-type; Identified by similarity to SP:Q53143; match to protein family HMM PF00034. (294 aa)
SPO2277Cytochrome, putative; Identified by match to protein family HMM PF01292; match to protein family HMM PF04264; Belongs to the UPF0312 family. (405 aa)
SPO2377Ferredoxin; Identified by match to protein family HMM PF00111. (132 aa)
SPO2389Oxidoreductase, molybdopterin-binding protein; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (760 aa)
SPO2577Membrane protein, putative. (362 aa)
SPO2694Identified by match to protein family HMM PF01322. (147 aa)
nuoNNADH dehydrogenase I, N subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (480 aa)
nuoMNADH dehydrogenase I, M subunit; Identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972. (513 aa)
nuoLNADH dehydrogenase I, L subunit; Identified by similarity to SP:P50939; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974. (714 aa)
nuoKNADH dehydrogenase I, K subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (101 aa)
nuoJNADH dehydrogenase I, J subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (200 aa)
nuoGNADH dehydrogenase I, G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (674 aa)
nuoFNADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (432 aa)
nuoDNADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (405 aa)
nuoCNADH-quinone oxidoreductase, C subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (200 aa)
nuoBNADH dehydrogenase I, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity). (177 aa)
nuoANADH dehydrogenase I, A subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (121 aa)
phaDpH adaption potassium efflux system protein PhaD; Identified by similarity to GB:CAA63737.1; match to protein family HMM PF00361. (515 aa)
SPO2989Cytochrome b562; Identified by similarity to SP:P16670; match to protein family HMM PF01292. (162 aa)
ctaECytochrome c oxidase, subunit III; Identified by match to protein family HMM PF00510. (271 aa)
ctaCCytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (278 aa)
SPO3183Oxidoreductase, molybdopterin-binding protein; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (677 aa)
msrQMembrane protein, putative; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, usi [...] (198 aa)
SPO3356Hypothetical protein; Identified by similarity to GB:BAB50697.1. (127 aa)
ccoP-1Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (288 aa)
ccoO-1Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781. (242 aa)
ccoN-1Cytochrome c oxidase, cbb3-type, subunit I; Identified by similarity to SP:P98059; match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family. (535 aa)
cycMCytochrome c552; Identified by similarity to SP:P54820; match to protein family HMM PF00034. (168 aa)
soeCSulfite dehydrogenase subunit SoeC; Identified by match to protein family HMM PF04976. (290 aa)
soeASulfite dehydrogenase molybdopterin cofacter-binding subunit SoeA; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (946 aa)
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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