(21 nodes) 4Fe-4S ferredoxin-type, iron-sulphur binding domain network (Ruegeria pomeroyi)

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Known Interactions

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Predicted Interactions

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Your Input:
	glcF	Glycolate oxidase, iron-sulfur subunit; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754. (440 aa)
	SPO0143	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (328 aa)
	SPO0316	Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone. (548 aa)
	sdhB	Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM TIGR00384; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa)
	queG	Iron-sulfur cluster-binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (346 aa)
	boxA	benzoyl-CoA oxygenase, A subunit; Identified by similarity to GB:AAN39377.1; match to protein family HMM PF00037; match to protein family HMM PF00175. (372 aa)
	soeB	Sulfite dehydrogenase iron-sulfur cluster-binding subunit SoeB; Identified by match to protein family HMM PF00037. (268 aa)
	SPO3522	Iron-sulfur-binding protein, RdxA/RdxB/FixG family; Identified by similarity to SP:P18396; match to protein family HMM PF00037. (475 aa)
	SPO0524	Hypothetical protein; Identified by similarity to GB:BAB48651.1. (211 aa)
	SPO0589	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein. (1090 aa)
	SPO0834	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (925 aa)
	SPO1419	Iron-sulfur cluster-binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (112 aa)
	SPO1459	Indolepyruvate oxidoreductase, IorA subunit, putative; Identified by similarity to SP:O07835; match to protein family HMM PF02775. (715 aa)
	SPO1521	Regulatory protein, putative; Identified by similarity to SP:Q00790. (689 aa)
	SPO1556	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (926 aa)
	SPO1738	Dehalogenase, putative; Identified by similarity to GB:AAO60101.1; match to protein family HMM PF00037; match to protein family HMM PF03860. (394 aa)
	SPO1777	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037. (434 aa)
	SPO1795	Formate dehydrogenase, iron-sulfur subunit, putative; Identified by similarity to SP:P27273; match to protein family HMM PF00037. (197 aa)
	SPO1800	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (649 aa)
	SPO1873	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558; match to protein family HMM PF02775. (1139 aa)
	nuoI	NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (164 aa)

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0316	SPO0589	SPO0316	SPO0589	Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.	0.664
SPO0316	nuoI	SPO0316	SPO2770	Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.	NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.618
SPO0316	sdhB	SPO0316	SPO0361	Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.	Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM TIGR00384; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	0.651
SPO0524	SPO0834	SPO0524	SPO0834	Hypothetical protein; Identified by similarity to GB:BAB48651.1.	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.787
SPO0524	SPO1556	SPO0524	SPO1556	Hypothetical protein; Identified by similarity to GB:BAB48651.1.	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.787
SPO0524	SPO1777	SPO0524	SPO1777	Hypothetical protein; Identified by similarity to GB:BAB48651.1.	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	0.719
SPO0524	nuoI	SPO0524	SPO2770	Hypothetical protein; Identified by similarity to GB:BAB48651.1.	NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.531
SPO0589	SPO0316	SPO0589	SPO0316	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.	Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.	0.664
SPO0589	SPO1419	SPO0589	SPO1419	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.	Iron-sulfur cluster-binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.434
SPO0589	SPO1777	SPO0589	SPO1777	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	0.518
SPO0589	SPO1873	SPO0589	SPO1873	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558; match to protein family HMM PF02775.	0.510
SPO0589	boxA	SPO0589	SPO3703	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.	benzoyl-CoA oxygenase, A subunit; Identified by similarity to GB:AAN39377.1; match to protein family HMM PF00037; match to protein family HMM PF00175.	0.616
SPO0589	nuoI	SPO0589	SPO2770	Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.	NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.787
SPO0834	SPO0524	SPO0834	SPO0524	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hypothetical protein; Identified by similarity to GB:BAB48651.1.	0.787
SPO0834	SPO1556	SPO0834	SPO1556	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.900
SPO0834	SPO1777	SPO0834	SPO1777	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.	0.614
SPO0834	SPO1795	SPO0834	SPO1795	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Formate dehydrogenase, iron-sulfur subunit, putative; Identified by similarity to SP:P27273; match to protein family HMM PF00037.	0.963
SPO0834	SPO1800	SPO0834	SPO1800	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.	0.512
SPO0834	SPO1873	SPO0834	SPO1873	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558; match to protein family HMM PF02775.	0.494
SPO0834	boxA	SPO0834	SPO3703	Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	benzoyl-CoA oxygenase, A subunit; Identified by similarity to GB:AAN39377.1; match to protein family HMM PF00037; match to protein family HMM PF00175.	0.658

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