STRINGSTRING
SPO0115 SPO0115 ackA ackA ald ald ggt ggt tpa tpa SPO0866 SPO0866 SPO3411 SPO3411 pta pta xsc xsc SPO3832 SPO3832
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SPO0115maoC family protein/phosphate acetyl/butaryl transferase; Identified by match to protein family HMM PF01515; match to protein family HMM PF01575. (464 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (394 aa)
aldAlanine dehydrogenase; Identified by similarity to SP:P30234; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; PMID: 16541231; Belongs to the AlaDH/PNT family. (371 aa)
ggtGamma-glutamyltranspeptidase; Identified by similarity to SP:P54422. (597 aa)
tpaTaurine--pyruvate aminotransferase; Identified by similarity to SP:Q9APM5; PMID: 16541231; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (465 aa)
SPO0866Gamma-glutamyltranspeptidase, putative; Identified by match to protein family HMM PF01019. (596 aa)
SPO3411Gamma-glutamyltranspeptidase, putative; Identified by match to protein family HMM PF01019. (525 aa)
ptaPhosphate acetyltransferase; Identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651; PMID: 16541231. (337 aa)
xscSulfoacetaldehyde acetyltransferase; Identified by similarity to SP:Q84H44; match to protein family HMM PF00205; match to protein family HMM PF02776; PMID: 16541231; Belongs to the TPP enzyme family. (596 aa)
SPO3832Identified by match to protein family HMM PF02423. (315 aa)
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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