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| | maeB | NADP-dependent malic enzyme; Identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949. (751 aa) |
| | cysQ | 3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family. (265 aa) |
| | SPO0097 | Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (483 aa) |
| | SPO0115 | maoC family protein/phosphate acetyl/butaryl transferase; Identified by match to protein family HMM PF01515; match to protein family HMM PF01575. (464 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (394 aa) |
| | bktB | Beta-ketothiolase; Identified by similarity to GB:AAC38322.1; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa) |
| | SPO0167 | Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family. (522 aa) |
| | aasadh | Alpha-aminoadipic semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (504 aa) |
| | dapF | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (269 aa) |
| | phbB | acetoacetyl-CoA reductase; Identified by similarity to SP:P23238; match to protein family HMM PF00106; match to protein family HMM TIGR01829. (240 aa) |
| | phbA | acetyl-CoA acetyltransferase; Identified by similarity to SP:P54810; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa) |
| | lysA | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (421 aa) |
| | lpdA | 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350. (462 aa) |
| | sucB | 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (502 aa) |
| | sucA | 2-oxoglutarate dehydrogenase, E1 component; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239. (985 aa) |
| | sucD | succinyl-CoA synthase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (294 aa) |
| | sucC | succinyl-CoA synthase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (397 aa) |
| | mdh | Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (320 aa) |
| | citE | Citrate lyase, beta subunit; Identified by similarity to SP:P77770; Belongs to the HpcH/HpaI aldolase family. (285 aa) |
| | SPO0355 | Hypothetical protein; Identified by similarity to GB:AAK25618.1. (342 aa) |
| | sdhC | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to protein family HMM PF01127. (128 aa) |
| | sdhD | Succinate dehydrogenase, hydrophobic membrane anchor protein; Identified by similarity to GB:AAC17941.1. (123 aa) |
| | sdhA | Succinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P31038; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (601 aa) |
| | sdhB | Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM TIGR00384; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa) |
| | SPO0368 | methylmalonyl-CoA mutase; Identified by similarity to SP:Q49115; match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641. (666 aa) |
| | ccrA | crotonyl-CoA reductase; Identified by match to protein family HMM PF00107; match to protein family HMM TIGR01751. (428 aa) |
| | bphC3 | Biphenyl-2,3-diol 1,2-dioxygenase III; Identified by similarity to SP:P47233; match to protein family HMM PF00903. (161 aa) |
| | SPO0415 | D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF02826. (310 aa) |
| | gltX-1 | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (443 aa) |
| | SPO0565 | Trimethylamine methyltransferase family protein; Belongs to the trimethylamine methyltransferase family. (507 aa) |
| | SPO0632 | D-isomer specific 2-hydroxyacid dehydrogenase family protein. (328 aa) |
| | xdhB | Xanthine dehydrogenase, B subunit; Identified by similarity to GB:CAA04470.2. (776 aa) |
| | xdhA | Xanthine dehydrogenase, A subunit; Identified by similarity to GB:CAA04469.1. (461 aa) |
| | hmgC | Maleylacetoacetate isomerase; Identified by similarity to SP:O43708. (213 aa) |
| | SPO0682 | Monooxygenase family protein. (537 aa) |
| | hmgB | Fumarylacetoacetase. (417 aa) |
| | hmgA | Homogentisate 1,2-dioxygenase; Identified by similarity to SP:Q9X4F5. (451 aa) |
| | SPO0693 | isobutyryl-CoA dehydrogenase; Identified by similarity to GB:AAL17673.1. (564 aa) |
| | gap-1 | Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (341 aa) |
| | pckA | Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (532 aa) |
| | bhbD | 3-hydroxybutyryl-CoA dehydrogenase; Identified by similarity to SP:P52041. (291 aa) |
| | paaZ | Phenylacetic acid degradation protein PaaZ; Identified by similarity to SP:P77455; match to protein family HMM PF00171; match to protein family HMM PF01575. (673 aa) |
| | SPO0739 | enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. (681 aa) |
| | paaB | enoyl-CoA hydratase/isomerase PaaB; Identified by similarity to SP:P77467; match to protein family HMM PF00378. (261 aa) |
| | paaF | phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (436 aa) |
| | SPO0752 | Phenylacetic acid degradation protein, putative. (252 aa) |
| | paaK | Phenylacetic acid degradation oxidoreductase PaaK; Identified by similarity to SP:P76081; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160. (357 aa) |
| | paaJ | Phenylacetic acid degradation protein PaaJ; Identified by similarity to SP:P76080; match to protein family HMM PF01883; match to protein family HMM TIGR02159. (153 aa) |
| | paaI | Phenylacetic acid degradation protein PaaI; Identified by similarity to SP:P76079; match to protein family HMM PF05138; match to protein family HMM TIGR02158. (253 aa) |
| | paaH | Phenylacetic acid degradation protein PaaH; Identified by similarity to SP:P76078; match to protein family HMM PF06243; match to protein family HMM TIGR02157. (94 aa) |
| | paaG | Phenylacetic acid degradation protein PaaG; Identified by similarity to GB:AAC24334.1; match to protein family HMM PF05138; match to protein family HMM TIGR02156. (330 aa) |
| | SPO0765 | Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family. (429 aa) |
| | SPO0772 | enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family. (698 aa) |
| | SPO0773 | Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa) |
| | rpe | Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family. (229 aa) |
| | SPO0786 | Identified by match to protein family HMM PF03061. (134 aa) |
| | SPO0819 | Amidohydrolase domain protein; Identified by match to protein family HMM PF01979. (388 aa) |
| | SPO0829 | Hypothetical protein; Identified by similarity to GB:AAR38366.1. (497 aa) |
| | SPO0833 | Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512. (567 aa) |
| | SPO0834 | Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (925 aa) |
| | galM | Aldose 1-epimerase; Identified by match to protein family HMM PF01263. (311 aa) |
| | SPO0864 | Glucokinase, putative; Belongs to the bacterial glucokinase family. (307 aa) |
| | SPO0871 | Identified by match to protein family HMM PF00576; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (118 aa) |
| | gap-2 | Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (327 aa) |
| | SPO0876 | Hypothetical protein; Identified by similarity to GB:BAB51632.1; match to protein family HMM PF06038. (275 aa) |
| | sat | Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate. (569 aa) |
| | SPO0913 | D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (317 aa) |
| | SPO0932 | methylmalonyl-CoA epimerase; Identified by similarity to GB:AAK52053.1; match to protein family HMM PF00903. (136 aa) |
| | algC | Phosphomannomutase/phosphoglucomutase; Identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880. (498 aa) |
| | argD | Acetylornithine aminotransferase; Identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (391 aa) |
| | soxX | Monoheme cytochrome c SoxX; Identified by similarity to GB:CAB94379.1; match to protein family HMM PF00034. (161 aa) |
| | soxY | Sulfur oxidation Y protein; Identified by similarity to GB:CAB94380.1; match to protein family HMM TIGR01409. (138 aa) |
| | soxZ | Sulfur oxidation Z protein; Identified by similarity to GB:CAB94381.1. (109 aa) |
| | soxA | Diheme cytochrome c SoxA; Identified by similarity to GB:AAF99434.1. (283 aa) |
| | soxB | Sulfur oxidation B protein; Identified by similarity to GB:CAA55824.2; match to protein family HMM PF00149; match to protein family HMM PF02872; match to protein family HMM TIGR01409; Belongs to the 5'-nucleotidase family. (567 aa) |
| | soxC | Sulfur oxidation molybdopterin C protein; Identified by similarity to PIR:T46965; match to protein family HMM PF00174; match to protein family HMM PF03404; match to protein family HMM TIGR01409. (427 aa) |
| | soxD | Diheme cytochrome c SoxD; Identified by similarity to PIR:T46966; match to protein family HMM PF00034. (347 aa) |
| | soxF | Sulfur oxidation F protein; Identified by similarity to GB:CAA55826.2. (420 aa) |
| | accC | acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (449 aa) |
| | accB | acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (164 aa) |
| | SPO1013 | Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family. (386 aa) |
| | pccB | propionyl-CoA carboxylase, beta subunit; Identified by similarity to PIR:T42208; match to protein family HMM PF01039. (510 aa) |
| | pccA | propionyl-CoA carboxylase, alpha subunit; This is one of the 2 subunits of the biotin-dependent propionyl-CoA carboxylase (PCC), the enzyme catalyzing the carboxylation of propionyl-CoA/propanoyl-CoA to D-methylmalonyl- CoA/(S)-methylmalonyl-CoA. Within the holoenzyme, the alpha subunit catalyzes the ATP-dependent carboxylation of the biotin carried by the biotin carboxyl carrier (BCC) domain, while the beta subunit then tranfers the carboxyl group from carboxylated biotin to propionyl-CoA (Probable). (681 aa) |
| | SPO1105 | methylmalonyl-CoA mutase; Identified by similarity to SP:O86028; match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641. (709 aa) |
| | doeD | Diaminobutyric acid transaminase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (457 aa) |
| | doeC | Aspartate-semialdehyde dehydrogenase; Identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780. (491 aa) |
| | doeB | N -acetyl-L-2,4-diaminobutyric acid deacetylase; Identified by match to protein family HMM PF04952; PMID: 19362561. (330 aa) |
| | doeA | Ectoine hydrolase; Identified by similarity to SP:P55667; PMID: 19362561. (395 aa) |
| | eutA | Ectoine utilization protein EutA; Identified by match to protein family HMM PF01177; PMID: 19362561. (254 aa) |
| | SPO1166 | Aminotransferase, class III family; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (450 aa) |
| | pyc | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1145 aa) |
| | SPO1193 | Identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; Belongs to the 4-oxalocrotonate tautomerase family. (68 aa) |
| | SPO1300 | Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family. (452 aa) |
| | SPO1302 | Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family. (446 aa) |
| | nthA | Nitrile hydratase subunit alpha; Identified by similarity to SP:P97051; match to protein family HMM PF02979; match to protein family HMM TIGR01323. (204 aa) |
| | nthB | Nitrile hydratase beta subunit; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family. (224 aa) |
| | rpiA | Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (262 aa) |
| | ppdK | Pyruvate, phosphate dikinase; Identified by match to protein family HMM PF00391; match to protein family HMM PF02896. (849 aa) |
| | SPO1457 | Identified by match to protein family HMM PF03061. (143 aa) |
| | SPO1461 | Hypothetical protein; Identified by similarity to GB:BAC48692.1. (267 aa) |
| | SPO1467 | Identified by match to protein family HMM PF00725; match to protein family HMM PF02737. (327 aa) |
| | SPO1469 | 3-ketosteroid dehydrogenase, putative; Identified by similarity to GB:AAF19054.1; match to protein family HMM PF00890. (462 aa) |
| | SPO1498 | Fumarate hydratase, class I, putative; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (502 aa) |
| | SPO1508 | Quinoprotein ethanol dehydrogenase; Identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011. (606 aa) |
| | SPO1524 | Hypothetical protein; Identified by similarity to GB:AAN68285.1. (260 aa) |
| | tmm | Trimethylamine (TMA) monooxygenase; Identified by similarity to PIR:JC7986. (450 aa) |
| | SPO1555 | Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512. (560 aa) |
| | SPO1556 | Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (926 aa) |
| | fhs-1 | Formate--tetrahydrofolate ligase; Identified by similarity to SP:Q59925; match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family. (558 aa) |
| | folD1 | folD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (296 aa) |
| | folD | folD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (292 aa) |
| | SPO1564 | MOFRL domain protein; Identified by match to protein family HMM PF05161. (424 aa) |
| | SPO1565 | Citrate lyase, putative; Identified by similarity to SP:O53078; Belongs to the HpcH/HpaI aldolase family. (325 aa) |
| | SPO1567 | Aminotransferase, putative. (415 aa) |
| | sucC-2 | malate--CoA ligase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (399 aa) |
| | sucD-2 | malate--CoA ligase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (296 aa) |
| | SPO1570 | D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (330 aa) |
| | ppc | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. (879 aa) |
| | glyA-1 | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (431 aa) |
| | SPO1574 | Identified by match to protein family HMM PF01645; Belongs to the glutamate synthase family. (450 aa) |
| | SPO1575 | Identified by match to protein family HMM PF01493. (225 aa) |
| | SPO1576 | Glutamine amidotransferase, class II; Identified by match to protein family HMM PF00310. (309 aa) |
| | SPO1586 | Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family. (983 aa) |
| | SPO1587 | Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267. (95 aa) |
| | SPO1588 | Sarcosine oxidase, beta subunit family; Identified by similarity to SP:P40875; match to protein family HMM TIGR01373. (416 aa) |
| | SPO1589 | Identified by match to protein family HMM PF02627. (127 aa) |
| | hemL | Glutamate-1-semialdehyde 2,1-aminomutase; Identified by similarity to SP:P48247; match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (424 aa) |
| | SPO1598 | Hypothetical protein; Identified by similarity to GB:CAE31122.1. (277 aa) |
| | SPO1602 | Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family. (502 aa) |
| | SPO1698 | Identified by match to protein family HMM PF01177. (241 aa) |
| | SPO1701 | Identified by match to protein family HMM PF00701; Belongs to the DapA family. (297 aa) |
| | ureA | Urease, gamma subunit; Identified by match to protein family HMM PF00547; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family. (100 aa) |
| | ureB | Urease, beta subunit; Identified by similarity to GB:BAB21066.1; match to protein family HMM PF00699; match to protein family HMM TIGR00192; Belongs to the urease beta subunit family. (101 aa) |
| | ureC | Urease, alpha subunit; Identified by match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (569 aa) |
| | glpX | Fructose-1,6-bisphosphatase, class II; Identified by match to protein family HMM PF03320; match to protein family HMM TIGR00330. (317 aa) |
| | hom | Homoserine dehydrogenase; Identified by similarity to SP:P08499; match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447. (428 aa) |
| | SPO1743 | Glutamate dehydrogenase; Identified by similarity to SP:P96110; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (476 aa) |
| | SPO1794 | Formate dehydrogenase, gamma subunit; Identified by match to protein family HMM TIGR01583. (393 aa) |
| | SPO1795 | Formate dehydrogenase, iron-sulfur subunit, putative; Identified by similarity to SP:P27273; match to protein family HMM PF00037. (197 aa) |
| | SPO1796 | Formate dehydrogenase, alpha subunit, putative; Identified by similarity to PIR:S18213; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (964 aa) |
| | acs | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (654 aa) |
| | SPO1825 | Glutamine synthetase family protein. (433 aa) |
| | SPO1862 | metFprotein-like protein; Identified by similarity to PIR:B97532. (309 aa) |
| | tkt | Transketolase; Identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; Belongs to the transketolase family. (673 aa) |
| | SPO1882 | Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa) |
| | fda | Fructose-bisphosphate aldolase, class I; Identified by similarity to SP:Q07159; match to protein family HMM PF00274. (293 aa) |
| | fumC | Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (464 aa) |
| | SPO1921 | Pyridoxal-phosphate dependent enzyme; Identified by match to protein family HMM PF00291. (344 aa) |
| | gcdH | glutaryl-CoA dehydrogenase; Identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771. (408 aa) |
| | pgi | Glucose-6-phosphate isomerase; Identified by match to protein family HMM PF00342. (539 aa) |
| | pgl | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (223 aa) |
| | zwf-1 | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (485 aa) |
| | hemB | Porphobilinogen synthase; Identified by similarity to SP:Q59643; match to protein family HMM PF00490; Belongs to the ALAD family. (332 aa) |
| | SPO2108 | Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family. (514 aa) |
| | SPO2134 | Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family. (514 aa) |
| | pdxH | Pyridoxamine 5''-phosphate oxidase, putative; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). (201 aa) |
| | gltX-2 | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (468 aa) |
| | gltA | Citrate synthase I; Identified by similarity to SP:P00891; match to protein family HMM PF00285; match to protein family HMM TIGR01798; Belongs to the citrate synthase family. (431 aa) |
| | gap-3 | Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (333 aa) |
| | SPO2222 | Pyruvate dehydrogenase complex, E3 component, lipoamide dehydrogenase, putative; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350. (464 aa) |
| | pgk | Phosphoglycerate kinase; Identified by similarity to SP:P50314; match to protein family HMM PF00162; Belongs to the phosphoglycerate kinase family. (398 aa) |
| | pdhA | Pyruvate dehydrogenase complex, E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (330 aa) |
| | pdhB | Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (459 aa) |
| | pdhC | Pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (437 aa) |
| | cysK | Cysteine synthase A; Identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139. (354 aa) |
| | cysE | Serine O-acetyltransferase; Identified by similarity to SP:P05796; match to protein family HMM PF00132; match to protein family HMM PF06426; match to protein family HMM TIGR01172. (270 aa) |
| | glnA | Glutamine synthetase, type I; Identified by similarity to SP:P06201; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653. (468 aa) |
| | acnA | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (896 aa) |
| | serB-1 | Phosphoserine phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488. (297 aa) |
| | SPO2386 | Hypothetical protein; Identified by similarity to GB:AAM35187.1. (109 aa) |
| | SPO2412 | Aldolase, putative; Identified by similarity to GB:BAB21456.3. (231 aa) |
| | SPO2413 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (250 aa) |
| | kdgK | 2-dehydro-3-deoxygluconokinase; Identified by similarity to SP:P37647; match to protein family HMM PF00294. (304 aa) |
| | SPO2427 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (240 aa) |
| | SPO2437 | Identified by match to protein family HMM PF01177. (260 aa) |
| | SPO2450 | Identified by match to protein family HMM PF01177. (250 aa) |
| | SPO2473 | Haloacid dehalogenase, type II, putative; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493. (253 aa) |
| | eno | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (425 aa) |
| | nahG | Salicylate hydroxylase; Identified by similarity to SP:P23262; match to protein family HMM PF01360. (388 aa) |
| | SPO2542 | Biotin/lipoate binding domain protein; Identified by match to protein family HMM PF00364. (75 aa) |
| | SPO2556 | N-carbamyl-L-amino acid amidohydrolase, putative; Identified by similarity to SP:P37113; match to protein family HMM PF01546; match to protein family HMM TIGR01879. (409 aa) |
| | gnl | Gluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF03758. (318 aa) |
| | SPO2583 | Identified by match to protein family HMM PF01425. (467 aa) |
| | SPO2607 | Gamma-glutamylisopropylamide synthetase, putative; Identified by similarity to GB:CAC81335.1; match to protein family HMM PF00120; Belongs to the glutamine synthetase family. (451 aa) |
| | SPO2615 | NADH-dependent flavin oxidoreductase, Oye family; Identified by match to protein family HMM PF00724. (358 aa) |
| | tpiA | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (251 aa) |
| | cobA-1 | uroporphyrin-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family. (258 aa) |
| | SPO2634 | Sulfite reductase, putative; Identified by match to protein family HMM PF01077; match to protein family HMM PF03460. (554 aa) |
| | cysH | Phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. (253 aa) |
| | SPO2697 | acyl-CoA synthetase, putative; Identified by similarity to GB:AAN69320.1; similarity to GB:BAC79255.1; match to protein family HMM PF02629. (697 aa) |
| | SPO2750 | Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family. (519 aa) |
| | SPO2768 | 4-carboxymuconolactone decarboxylase, putative; Identified by match to protein family HMM PF02627. (139 aa) |
| | acsA | Acetyl-coenzyme A synthetase; Identified by similarity to SP:P39062; match to protein family HMM PF00501. (510 aa) |
| | glcB | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (715 aa) |
| | cobA-2 | uroporphyrin-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; Belongs to the precorrin methyltransferase family. (242 aa) |
| | SPO2882 | Identified by match to protein family HMM PF00701; Belongs to the DapA family. (302 aa) |
| | SPO2918 | acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa) |
| | fabJ-1 | Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. (733 aa) |
| | SPO2932 | Malate dehydrogenase; Identified by similarity to SP:O30807; match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949. (757 aa) |
| | SPO2938 | Identified by match to protein family HMM PF01425. (476 aa) |
| | SPO2993 | Identified by match to protein family HMM PF05161. (368 aa) |
| | metF | 5,10-methylenetetrahydrofolate reductase; Identified by similarity to SP:P00394; match to protein family HMM PF02219; match to protein family HMM TIGR00676; Belongs to the methylenetetrahydrofolate reductase family. (307 aa) |
| | SPO3029 | Serine--glyoxylate transaminase, putative; Identified by similarity to SP:O08374; match to protein family HMM PF00266. (402 aa) |
| | eda-1 | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182. (210 aa) |
| | edd | Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (601 aa) |
| | zwf-2 | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (483 aa) |
| | SPO3035 | Aspartate kinase, monofunctional class; Identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657; Belongs to the aspartokinase family. (412 aa) |
| | thrC | Threonine synthase; Identified by similarity to GB:CAA82670.1; match to protein family HMM PF00291; match to protein family HMM TIGR00260. (463 aa) |
| | fsaB | Fructose-6-phosphate aldolase 2; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (217 aa) |
| | SPO3152 | MaoC domain protein; Identified by match to protein family HMM PF01575. (164 aa) |
| | SPO3153 | Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360. (563 aa) |
| | SPO3156 | L-threonine aldolase, low-specificity, putative; Identified by similarity to SP:O50584. (345 aa) |
| | prs | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (339 aa) |
| | rpiB | Ribose 5-phosphate isomerase B; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120. (149 aa) |
| | comC | (2R)-3-sulfolactate dehydrogenase; Identified by match to protein family HMM PF02615; PMID: 19581363; Belongs to the LDH2/MDH2 oxidoreductase family. (337 aa) |
| | SPO3289 | phenylacetate-CoA ligase, putative; Identified by similarity to GB:AAF26285.1. (405 aa) |
| | gabD-2 | Succinate-semialdehyde dehydrogenase; Identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780; Belongs to the aldehyde dehydrogenase family. (503 aa) |
| | dapE | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (380 aa) |
| | dapD | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Identified by similarity to SP:P03948; match to protein family HMM PF00132; match to protein family HMM TIGR00965; Belongs to the transferase hexapeptide repeat family. (275 aa) |
| | serB-2 | Phosphoserine phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488. (302 aa) |
| | SPO3354 | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (393 aa) |
| | serA | D-3-phosphoglycerate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; match to protein family HMM TIGR01327; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (531 aa) |
| | SPO3368 | Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (777 aa) |
| | SPO3382 | Identified by match to protein family HMM PF00171. (479 aa) |
| | SPO3408 | acetyl-CoA C-acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa) |
| | glcD | Glycolate oxidase, GlcD subunit; Identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913. (482 aa) |
| | glcE | Glycolate oxidase, GlcE subunit; Identified by similarity to SP:P52073; match to protein family HMM PF01565. (362 aa) |
| | glcF | Glycolate oxidase, iron-sulfur subunit; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754. (440 aa) |
| | glyA-3 | Serine hydroxymethyltransferase; Identified by match to protein family HMM PF00464. (431 aa) |
| | dapA | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (290 aa) |
| | soeC | Sulfite dehydrogenase subunit SoeC; Identified by match to protein family HMM PF04976. (290 aa) |
| | soeB | Sulfite dehydrogenase iron-sulfur cluster-binding subunit SoeB; Identified by match to protein family HMM PF00037. (268 aa) |
| | soeA | Sulfite dehydrogenase molybdopterin cofacter-binding subunit SoeA; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (946 aa) |
| | pta | Phosphate acetyltransferase; Identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651; PMID: 16541231. (337 aa) |
| | pyk | Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family. (481 aa) |
| | mclA | malyl-CoA lyase; Identified by similarity to GB:AAB58884.1; match to protein family HMM TIGR01588; Belongs to the HpcH/HpaI aldolase family. (320 aa) |
| | accA | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (320 aa) |
| | SPO3646 | Identified by match to protein family HMM PF00378. (309 aa) |
| | hemC | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. (319 aa) |
| | catB | Muconate cycloisomerase I; Identified by similarity to PIR:T48870; match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (376 aa) |
| | SPO3686 | Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. (256 aa) |
| | SPO3688 | Extradiol ring-cleavage dioxygenase family protein; Identified by match to protein family HMM PF00903. (326 aa) |
| | gtdA-1 | Gentisate 1,2-dioxygenase; Identified by similarity to GB:CAA12267.1. (344 aa) |
| | SPO3691 | Identified by match to protein family HMM PF01557. (232 aa) |
| | SPO3692 | Monooxygenase, putative; Identified by match to protein family HMM PF01360. (395 aa) |
| | badA-1 | Benzoate-coenzyme A ligase; Identified by similarity to GB:AAA92151.1; match to protein family HMM PF00501. (509 aa) |
| | asd | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (340 aa) |
| | SPO3719 | Thiosulfate sulfurtransferase, putative; Identified by similarity to PIR:T52663; match to protein family HMM PF00581. (284 aa) |
| | SPO3737 | Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070. (403 aa) |
| | gltB | Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898. (1510 aa) |
| | gltD | Glutamate synthase, small subunit; Identified by similarity to GB:AAG38999.1; match to protein family HMM PF00070; match to protein family HMM TIGR01318. (477 aa) |
| | acoC | Acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase; Identified by similarity to SP:Q59695; match to protein family HMM PF00364; match to protein family HMM PF00561. (366 aa) |
| | gpmI | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (505 aa) |
| | accD | acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (314 aa) |
| | SPO3822 | HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509. (206 aa) |
| | SPO3829 | S-formylglutathione hydrolase, putative; Serine hydrolase involved in the detoxification of formaldehyde. (278 aa) |
| | dapB | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. (269 aa) |
| | SPO3850 | Glutathione-dependent formaldehyde dehydrogenase; Identified by similarity to SP:P45382; match to protein family HMM PF00107; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (370 aa) |
| | SPO3853 | uroporphyrinogen-III synthase, putative; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (237 aa) |
| | gap-4 | Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (332 aa) |
