(6 nodes) Reticulon, and Lunapark family network (Rhizopus delemar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RO3G_01024	Zinc_ribbon_10 domain-containing protein. (182 aa)
	RO3G_03850	Protein YOP1. (182 aa)
	RO3G_08778	Reticulon-like protein. (302 aa)
	RO3G_13692	Reticulon-like protein. (255 aa)
	RO3G_15560	Reticulon-like protein. (409 aa)
	RO3G_16188	Zinc_ribbon_10 domain-containing protein. (257 aa)

Your Current Organism:

Rhizopus delemar

NCBI taxonomy Id: 246409
Other names: R. delemar RA 99-880, Rhizopus delemar RA 99-880, Rhizopus delemar RA99-880

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RO3G_01024	RO3G_03850	I1BJE0	I1BSG5	Zinc_ribbon_10 domain-containing protein.	Protein YOP1.	0.443
RO3G_01024	RO3G_08778	I1BJE0	I1C6J3	Zinc_ribbon_10 domain-containing protein.	Reticulon-like protein.	0.633
RO3G_01024	RO3G_13692	I1BJE0	I1CKK1	Zinc_ribbon_10 domain-containing protein.	Reticulon-like protein.	0.633
RO3G_01024	RO3G_15560	I1BJE0	I1CQW9	Zinc_ribbon_10 domain-containing protein.	Reticulon-like protein.	0.633
RO3G_03850	RO3G_01024	I1BSG5	I1BJE0	Protein YOP1.	Zinc_ribbon_10 domain-containing protein.	0.443
RO3G_03850	RO3G_08778	I1BSG5	I1C6J3	Protein YOP1.	Reticulon-like protein.	0.538
RO3G_03850	RO3G_13692	I1BSG5	I1CKK1	Protein YOP1.	Reticulon-like protein.	0.666
RO3G_03850	RO3G_15560	I1BSG5	I1CQW9	Protein YOP1.	Reticulon-like protein.	0.666
RO3G_03850	RO3G_16188	I1BSG5	I1CSP7	Protein YOP1.	Zinc_ribbon_10 domain-containing protein.	0.443
RO3G_08778	RO3G_01024	I1C6J3	I1BJE0	Reticulon-like protein.	Zinc_ribbon_10 domain-containing protein.	0.633
RO3G_08778	RO3G_03850	I1C6J3	I1BSG5	Reticulon-like protein.	Protein YOP1.	0.538
RO3G_08778	RO3G_16188	I1C6J3	I1CSP7	Reticulon-like protein.	Zinc_ribbon_10 domain-containing protein.	0.633
RO3G_13692	RO3G_01024	I1CKK1	I1BJE0	Reticulon-like protein.	Zinc_ribbon_10 domain-containing protein.	0.633
RO3G_13692	RO3G_03850	I1CKK1	I1BSG5	Reticulon-like protein.	Protein YOP1.	0.666
RO3G_13692	RO3G_16188	I1CKK1	I1CSP7	Reticulon-like protein.	Zinc_ribbon_10 domain-containing protein.	0.633
RO3G_15560	RO3G_01024	I1CQW9	I1BJE0	Reticulon-like protein.	Zinc_ribbon_10 domain-containing protein.	0.633
RO3G_15560	RO3G_03850	I1CQW9	I1BSG5	Reticulon-like protein.	Protein YOP1.	0.666
RO3G_15560	RO3G_16188	I1CQW9	I1CSP7	Reticulon-like protein.	Zinc_ribbon_10 domain-containing protein.	0.633
RO3G_16188	RO3G_03850	I1CSP7	I1BSG5	Zinc_ribbon_10 domain-containing protein.	Protein YOP1.	0.443
RO3G_16188	RO3G_08778	I1CSP7	I1C6J3	Zinc_ribbon_10 domain-containing protein.	Reticulon-like protein.	0.633