(46 nodes) Mixed, incl. SAGA complex, and Collagen formation network (Coccidioides immitis RS)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CIMG00986	Uncharacterized protein. (1013 aa)
	CIMG00986-2	Transcriptional co-activator. (421 aa)
	CIMG05596-2	Uncharacterized protein. (413 aa)
	CIMG_07690	Glycosyl hydrolase. (764 aa)
	CIMG_07708	NIMA-interacting protein TinC. (979 aa)
	CIMG_08136	Uncharacterized protein. (397 aa)
	CIMG_06991	Glutaredoxin-like protein; Belongs to the glutaredoxin family. (105 aa)
	CIMG_03798	Transcriptional activator spt7. (1189 aa)
	CIMG_06465	Histone acetylase complex subunit; Belongs to the PI3/PI4-kinase family. (3776 aa)
	CIMG_01021	Uncharacterized protein. (321 aa)
	CIMG_04956	HIT finger domain-containing protein. (208 aa)
	CIMG_01704	Ubiquitin carboxyl-terminal hydrolase. (490 aa)
	CIMG_00673	WD repeat protein. (459 aa)
	CIMG_02245	Zn(2)-C6 fungal-type domain-containing protein. (601 aa)
	CIMG_06699	Transcription factor. (627 aa)
	CIMG09946	Variable surface lipoprotein. (393 aa)
	CIMG_09076	Peptidyl-tRNA hydrolase. (204 aa)
	CIMG_09077	Uncharacterized protein. (271 aa)
	CIMG_09215	Ubiquitin C-terminal hydrolase; Belongs to the peptidase C19 family. (624 aa)
	CIMG_07601	Uncharacterized protein. (615 aa)
	CIMG_07678	Altered inheritance of mitochondria protein 24, mitochondrial. (345 aa)
	CIMG_07701	Uncharacterized protein. (406 aa)
	CIMG_07914	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (514 aa)
	CIMG_08125	Uncharacterized protein. (463 aa)
	CIMG_08135	CoA_binding domain-containing protein. (160 aa)
	CIMG_08764	WD repeat protein. (1116 aa)
	CIMG_05819	SAGA-associated factor 11; Functions as component of the transcription regulatory histone acetylation (HAT) complex SAGA. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA [...] (340 aa)
	CIMG_05889	SAGA complex component. (453 aa)
	CIMG_06519	HypA-like protein. (485 aa)
	CIMG_06755	Uncharacterized protein. (643 aa)
	CIMG06834	Endoglucanase. (214 aa)
	CIMG03044	BZIP domain-containing protein. (647 aa)
	CIMG_03363	Transcription initiation protein SPT3. (320 aa)
	CIMG_03652	Ubiquitin carboxyl-terminal hydrolase. (613 aa)
	CIMG_03772	Uncharacterized protein. (357 aa)
	CIMG_04317	Extracellular matrix protein. (222 aa)
	CIMG_04636	Telomere length regulation protein. (994 aa)
	CIMG_04942	Transcriptional regulator Ngg1. (674 aa)
	CIMG_00589	Histone acetyltransferase GCN5. (406 aa)
	CIMG_00791	SAGA complex component. (398 aa)
	CIMG_00796	HEAT repeat protein. (1180 aa)
	CIMG_00900	Uncharacterized protein. (5716 aa)
	CIMG_01102	Glycosidase; Belongs to the glycosyl hydrolase 16 family. (416 aa)
	CIMG_01250	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (633 aa)
	CIMG_01254	Uncharacterized protein. (1068 aa)
	CIMG_01532	DlpA domain-containing protein. (240 aa)

Your Current Organism:

Coccidioides immitis RS

NCBI taxonomy Id: 246410
Other names: C. immitis RS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIMG00986	CIMG00986-2	A0A0D8JSB3	A0A0D8JSY8	Uncharacterized protein.	Transcriptional co-activator.	0.735
CIMG00986	CIMG05596-2	A0A0D8JSB3	A0A0D8JWA2	Uncharacterized protein.	Uncharacterized protein.	0.427
CIMG00986	CIMG_00589	A0A0D8JSB3	J3KHB8	Uncharacterized protein.	Histone acetyltransferase GCN5.	0.427
CIMG00986	CIMG_00791	A0A0D8JSB3	J3KHR7	Uncharacterized protein.	SAGA complex component.	0.569
CIMG00986	CIMG_01704	A0A0D8JSB3	A0A0E1RYW2	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.426
CIMG00986	CIMG_03363	A0A0D8JSB3	J3KB68	Uncharacterized protein.	Transcription initiation protein SPT3.	0.828
CIMG00986	CIMG_03652	A0A0D8JSB3	J3KBV0	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.426
CIMG00986	CIMG_03798	A0A0D8JSB3	A0A0E1RWW0	Uncharacterized protein.	Transcriptional activator spt7.	0.427
CIMG00986	CIMG_04942	A0A0D8JSB3	J3KEJ6	Uncharacterized protein.	Transcriptional regulator Ngg1.	0.818
CIMG00986	CIMG_05819	A0A0D8JSB3	J3K6V0	Uncharacterized protein.	SAGA-associated factor 11; Functions as component of the transcription regulatory histone acetylation (HAT) complex SAGA. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA [...]	0.795
CIMG00986	CIMG_05889	A0A0D8JSB3	J3K701	Uncharacterized protein.	SAGA complex component.	0.802
CIMG00986	CIMG_06465	A0A0D8JSB3	A0A0E1RXH4	Uncharacterized protein.	Histone acetylase complex subunit; Belongs to the PI3/PI4-kinase family.	0.825
CIMG00986	CIMG_07914	A0A0D8JSB3	J3K4E2	Uncharacterized protein.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.716
CIMG00986	CIMG_09215	A0A0D8JSB3	J3K1V7	Uncharacterized protein.	Ubiquitin C-terminal hydrolase; Belongs to the peptidase C19 family.	0.426
CIMG00986-2	CIMG00986	A0A0D8JSY8	A0A0D8JSB3	Transcriptional co-activator.	Uncharacterized protein.	0.735
CIMG00986-2	CIMG05596-2	A0A0D8JSY8	A0A0D8JWA2	Transcriptional co-activator.	Uncharacterized protein.	0.825
CIMG00986-2	CIMG_00589	A0A0D8JSY8	J3KHB8	Transcriptional co-activator.	Histone acetyltransferase GCN5.	0.825
CIMG00986-2	CIMG_00673	A0A0D8JSY8	A0A0E1RZE0	Transcriptional co-activator.	WD repeat protein.	0.433
CIMG00986-2	CIMG_00791	A0A0D8JSY8	J3KHR7	Transcriptional co-activator.	SAGA complex component.	0.996
CIMG00986-2	CIMG_01704	A0A0D8JSY8	A0A0E1RYW2	Transcriptional co-activator.	Ubiquitin carboxyl-terminal hydrolase.	0.952