(40 nodes) Catalytic step 2 spliceosome network (Coccidioides immitis RS)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CIMG_09432	Pinin/SDK/memA domain-containing protein. (311 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	CIMG_09295	Small nuclear ribonucleoprotein Sm D2. (114 aa)
	CIMG_10309	Pre-mRNA-splicing factor CLF1. (671 aa)
	CIMG_09917	Peptidyl-prolyl cis-trans isomerase cypE. (630 aa)
	CIMG_08633	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1416 aa)
	CIMG_02437	Pre-mRNA-splicing factor syf2. (292 aa)
	CIMG_05119	Peptidyl prolyl cis-trans isomerase Cyclophilin. (152 aa)
	CIMG_00437	Pre-mRNA splicing factor. (580 aa)
	CIMG_06396	Peptidyl-prolyl isomerase cwc27. (574 aa)
	CIMG_03202	U6 snRNA-associated Sm-like protein LSm7. (144 aa)
	CIMG_03980	BCAS2 domain-containing protein. (213 aa)
	CIMG_08445	Pre-mRNA-splicing factor slt11. (389 aa)
	CIMG_06238	Protein DGCR14. (470 aa)
	CIMG_09200	Pre-mRNA-splicing factor syf1. (852 aa)
	CIMG_08980	Pre-mRNA-splicing factor prp46. (450 aa)
	CIMG_04653	U2 snRNP component HSH155, variant. (1228 aa)
	CIMG_04621	Pre-mRNA splicing factor ATP-dependent RNA helicase prp16. (1003 aa)
	CIMG_04777	Pre-mRNA-splicing factor cwc22. (906 aa)
	CIMG_01605	Splicing factor 3a subunit 2. (239 aa)
	CIMG_02263	Small GTP-binding protein. (987 aa)
	CIMG_00256	Small nuclear ribonucleoprotein SmF. (89 aa)
	CIMG_00806	Pre-mRNA-splicing factor cwc15. (253 aa)
	CIMG_00987	Pre-mRNA splicing factor. (940 aa)
	CIMG_00993	Pre-mRNA branch site protein p14. (115 aa)
	CIMG_01407	Small nuclear ribonucleoprotein LSM2. (178 aa)
	CIMG_04293	Small nuclear ribonucleoprotein G. (78 aa)
	CIMG_04569	Cactin. (545 aa)
	CIMG_04573	Pre-mRNA-processing-splicing factor 8. (2354 aa)
	CIMG_06511	WD repeat protein. (333 aa)
	CIMG_06466	mRNA splicing protein Yju2. (273 aa)
	CIMG_06339	Splicing factor 3b. (587 aa)
	CIMG_05989	Pre-mRNA-splicing factor cwc2. (415 aa)
	CIMG_05824	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
	CIMG_08719	Uncharacterized protein. (361 aa)
	CIMG_08016	mRNA splicing factor. (573 aa)
	CIMG_07811	Uncharacterized protein. (266 aa)
	CIMG_07750	U5 snRNP complex subunit. (362 aa)
	CIMG_09712	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (223 aa)
	CIMG_09586	Small nuclear ribonucleoprotein B and B. (223 aa)

Your Current Organism:

Coccidioides immitis RS

NCBI taxonomy Id: 246410
Other names: C. immitis RS

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIMG_00256	CIMG_00437	J3KGL9	A0A0E1RY37	Small nuclear ribonucleoprotein SmF.	Pre-mRNA splicing factor.	0.962
CIMG_00256	CIMG_00806	J3KGL9	J3KHT2	Small nuclear ribonucleoprotein SmF.	Pre-mRNA-splicing factor cwc15.	0.944
CIMG_00256	CIMG_00987	J3KGL9	J3KI64	Small nuclear ribonucleoprotein SmF.	Pre-mRNA splicing factor.	0.994
CIMG_00256	CIMG_00993	J3KGL9	J3KI67	Small nuclear ribonucleoprotein SmF.	Pre-mRNA branch site protein p14.	0.919
CIMG_00256	CIMG_01407	J3KGL9	J3KJ52	Small nuclear ribonucleoprotein SmF.	Small nuclear ribonucleoprotein LSM2.	0.995
CIMG_00256	CIMG_01605	J3KGL9	J3KJK0	Small nuclear ribonucleoprotein SmF.	Splicing factor 3a subunit 2.	0.963
CIMG_00256	CIMG_02263	J3KGL9	J3KKZ6	Small nuclear ribonucleoprotein SmF.	Small GTP-binding protein.	0.997
CIMG_00256	CIMG_02437	J3KGL9	A0A0E1S0T9	Small nuclear ribonucleoprotein SmF.	Pre-mRNA-splicing factor syf2.	0.879
CIMG_00256	CIMG_03202	J3KGL9	J3KAU8	Small nuclear ribonucleoprotein SmF.	U6 snRNA-associated Sm-like protein LSm7.	0.989
CIMG_00256	CIMG_03980	J3KGL9	J3KCJ1	Small nuclear ribonucleoprotein SmF.	BCAS2 domain-containing protein.	0.923
CIMG_00256	CIMG_04293	J3KGL9	J3KD72	Small nuclear ribonucleoprotein SmF.	Small nuclear ribonucleoprotein G.	0.999
CIMG_00256	CIMG_04573	J3KGL9	J3KDS8	Small nuclear ribonucleoprotein SmF.	Pre-mRNA-processing-splicing factor 8.	0.995
CIMG_00256	CIMG_04621	J3KGL9	J3KDV7	Small nuclear ribonucleoprotein SmF.	Pre-mRNA splicing factor ATP-dependent RNA helicase prp16.	0.898
CIMG_00256	CIMG_04653	J3KGL9	A0A0D8JVP1	Small nuclear ribonucleoprotein SmF.	U2 snRNP component HSH155, variant.	0.987
CIMG_00256	CIMG_04777	J3KGL9	J3KE74	Small nuclear ribonucleoprotein SmF.	Pre-mRNA-splicing factor cwc22.	0.869
CIMG_00256	CIMG_05119	J3KGL9	A0A0E1RYN7	Small nuclear ribonucleoprotein SmF.	Peptidyl prolyl cis-trans isomerase Cyclophilin.	0.732
CIMG_00256	CIMG_05824	J3KGL9	J3K6V1	Small nuclear ribonucleoprotein SmF.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.905
CIMG_00256	CIMG_05989	J3KGL9	J3K770	Small nuclear ribonucleoprotein SmF.	Pre-mRNA-splicing factor cwc2.	0.986
CIMG_00256	CIMG_06339	J3KGL9	J3K7Y6	Small nuclear ribonucleoprotein SmF.	Splicing factor 3b.	0.978
CIMG_00256	CIMG_06396	J3KGL9	A0A0E1RXF5	Small nuclear ribonucleoprotein SmF.	Peptidyl-prolyl isomerase cwc27.	0.880