(40 nodes) Sigma factor activity, and Domain of unknown function (DUF4974) network (Bacteroides cellulosilyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sigR_1	ECF RNA polymerase sigma factor SigR; Belongs to the sigma-70 factor family. ECF subfamily. (167 aa)
	pqqL_4	Peptidase M16 inactive domain protein. (966 aa)
	ALJ58363.1	Fec operon regulator FecR. (329 aa)
	ALJ58364.1	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (209 aa)
	ALJ58386.1	Fec operon regulator FecR. (326 aa)
	rpoE_2	ECF RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa)
	ALJ58401.1	Fec operon regulator FecR. (390 aa)
	ALJ58403.1	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
	ALJ58933.1	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (179 aa)
	sigR_2	ECF RNA polymerase sigma factor SigR; Belongs to the sigma-70 factor family. ECF subfamily. (197 aa)
	sigR_3	ECF RNA polymerase sigma factor SigR; Belongs to the sigma-70 factor family. ECF subfamily. (167 aa)
	sigR_4	ECF RNA polymerase sigma factor SigR; Belongs to the sigma-70 factor family. ECF subfamily. (168 aa)
	sigL	ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)
	ALJ59650.1	Fec operon regulator FecR. (323 aa)
	ALJ60215.1	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (186 aa)
	ALJ60216.1	Fec operon regulator FecR. (315 aa)
	ALJ60227.1	Fec operon regulator FecR. (333 aa)
	carQ_1	RNA polymerase sigma factor CarQ; Belongs to the sigma-70 factor family. ECF subfamily. (199 aa)
	ALJ60317.1	Fec operon regulator FecR. (323 aa)
	rpoE_5	ECF RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa)
	ALJ60423.1	Fec operon regulator FecR. (404 aa)
	ALJ60424.1	RNA polymerase sigma factor. (200 aa)
	fecI_1	Putative RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa)
	ALJ60526.1	Fec operon regulator FecR. (314 aa)
	ALJ60531.1	Fec operon regulator FecR. (311 aa)
	carQ_2	RNA polymerase sigma factor CarQ; Belongs to the sigma-70 factor family. ECF subfamily. (177 aa)
	sigE_4	ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
	ALJ60846.1	Fec operon regulator FecR. (323 aa)
	carQ_3	RNA polymerase sigma factor CarQ; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
	rpoE_6	ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (162 aa)
	sigV	RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily. (186 aa)
	ALJ61474.1	Fec operon regulator FecR. (336 aa)
	ylaC_2	RNA polymerase sigma factor YlaC; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
	ALJ61954.1	Hypothetical protein. (435 aa)
	fecI_2	Putative RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
	sigE_5	ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
	sigW_7	ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily. (186 aa)
	ALJ62360.1	Fec operon regulator FecR. (318 aa)
	cirA_8	Colicin I receptor precursor. (1047 aa)
	ALJ62362.1	Hypothetical protein. (475 aa)

Your Current Organism:

Bacteroides cellulosilyticus

NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALJ58363.1	ALJ58364.1	BcellWH2_01101	BcellWH2_01102	Fec operon regulator FecR.	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.900
ALJ58363.1	ALJ58403.1	BcellWH2_01101	BcellWH2_01141	Fec operon regulator FecR.	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.756
ALJ58363.1	ALJ58933.1	BcellWH2_01101	BcellWH2_01680	Fec operon regulator FecR.	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.792
ALJ58363.1	ALJ60215.1	BcellWH2_01101	BcellWH2_02977	Fec operon regulator FecR.	RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.696
ALJ58363.1	ALJ60424.1	BcellWH2_01101	BcellWH2_03187	Fec operon regulator FecR.	RNA polymerase sigma factor.	0.404
ALJ58363.1	carQ_1	BcellWH2_01101	BcellWH2_02990	Fec operon regulator FecR.	RNA polymerase sigma factor CarQ; Belongs to the sigma-70 factor family. ECF subfamily.	0.575
ALJ58363.1	carQ_2	BcellWH2_01101	BcellWH2_03299	Fec operon regulator FecR.	RNA polymerase sigma factor CarQ; Belongs to the sigma-70 factor family. ECF subfamily.	0.766
ALJ58363.1	carQ_3	BcellWH2_01101	BcellWH2_03624	Fec operon regulator FecR.	RNA polymerase sigma factor CarQ; Belongs to the sigma-70 factor family. ECF subfamily.	0.760
ALJ58363.1	fecI_1	BcellWH2_01101	BcellWH2_03291	Fec operon regulator FecR.	Putative RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.	0.800
ALJ58363.1	fecI_2	BcellWH2_01101	BcellWH2_04856	Fec operon regulator FecR.	Putative RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.	0.793
ALJ58363.1	rpoE_5	BcellWH2_01101	BcellWH2_03080	Fec operon regulator FecR.	ECF RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.	0.780
ALJ58363.1	sigE_4	BcellWH2_01101	BcellWH2_03482	Fec operon regulator FecR.	ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.	0.779
ALJ58363.1	sigE_5	BcellWH2_01101	BcellWH2_04863	Fec operon regulator FecR.	ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.	0.771
ALJ58363.1	sigL	BcellWH2_01101	BcellWH2_02410	Fec operon regulator FecR.	ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily.	0.518
ALJ58363.1	sigV	BcellWH2_01101	BcellWH2_04256	Fec operon regulator FecR.	RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily.	0.738
ALJ58364.1	ALJ58363.1	BcellWH2_01102	BcellWH2_01101	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Fec operon regulator FecR.	0.900
ALJ58364.1	ALJ58386.1	BcellWH2_01102	BcellWH2_01124	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Fec operon regulator FecR.	0.720
ALJ58364.1	ALJ58401.1	BcellWH2_01102	BcellWH2_01139	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Fec operon regulator FecR.	0.674
ALJ58364.1	ALJ59650.1	BcellWH2_01102	BcellWH2_02411	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Fec operon regulator FecR.	0.740
ALJ58364.1	ALJ60216.1	BcellWH2_01102	BcellWH2_02978	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Fec operon regulator FecR.	0.694

page 1 of 29

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About