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rpoE_2 rpoE_2 sigR_2 sigR_2 sigR_3 sigR_3 sigR_4 sigR_4 rpoE_6 rpoE_6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoE_2ECF RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa)
sigR_2ECF RNA polymerase sigma factor SigR; Belongs to the sigma-70 factor family. ECF subfamily. (197 aa)
sigR_3ECF RNA polymerase sigma factor SigR; Belongs to the sigma-70 factor family. ECF subfamily. (167 aa)
sigR_4ECF RNA polymerase sigma factor SigR; Belongs to the sigma-70 factor family. ECF subfamily. (168 aa)
rpoE_6ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (162 aa)
Your Current Organism:
Bacteroides cellulosilyticus
NCBI taxonomy Id: 246787
Other names: B. cellulosilyticus, Bacteroides cellulosilyticus Robert et al. 2007 emend. Hahnke et al. 2016, CCUG 44979, DSM 14838, JCM 15632, strain CRE21
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