STRINGSTRING
NFA_4750 NFA_4750 NFA_28450 NFA_28450 NFA_33560 NFA_33560 NFA_22480 NFA_22480 NFA_17280 NFA_17280 NFA_1470 NFA_1470 NFA_11790 NFA_11790 NFA_33740 NFA_33740 nirD nirD NFA_26970 NFA_26970
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
NFA_4750Putative oxygenase. (405 aa)
NFA_28450Putative ring-cleavage dioxygenase large subunit. (429 aa)
NFA_33560Putative oxygenase. (382 aa)
NFA_22480Putative terminal oxygenase. (395 aa)
NFA_17280Putative cytochrome c component. (394 aa)
NFA_1470Hypothetical protein. (511 aa)
NFA_11790Hypothetical protein. (331 aa)
NFA_33740Putative oxygenase. (391 aa)
nirDPutative nitrite reductase (NAD(P)H) subunit. (131 aa)
NFA_26970Putative oxidoreductase. (525 aa)
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
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