(15 nodes) Mixed, incl. Glycosyl transferase, family 9, and Histidinol-phosphate phosphatase network (Jettenia caeni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GAB61220.1	ADP-heptose--LPS heptosyltransferase. (351 aa)
	GAB62978.1	Glycosyltransferase. (291 aa)
	GAB63387.1	Putative glycosyltransferase. (371 aa)
	GAB63761.1	Conserved hypothetical protein. (354 aa)
	GAB63776.1	Heptosyltransferase. (372 aa)
	GAB63777.1	Glycosyltransferase. (320 aa)
	GAB63778.1	Glycosyltransferase. (434 aa)
	GAB63806.1	Glycosyltransferase. (323 aa)
	GAB63807.1	Carbamoyltransferase. (579 aa)
	GAB63808.1	Lipopolysaccharide heptosyltransferase. (365 aa)
	GAB63809.1	Hydrolase. (197 aa)
	GAB63810.1	Short-chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (248 aa)
	GAB64295.1	Putative D,D-heptose 1,7-bisphosphate phosphatase. (185 aa)
	gmhA	Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily. (189 aa)
	hldE	ADP-heptose synthase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family. (498 aa)

Your Current Organism:

Jettenia caeni

NCBI taxonomy Id: 247490
Other names: C. Jettenia caeni, Candidatus Jettenia caeni, planctomycete KSU-1, strain KSU-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAB61220.1	GAB63387.1	KSU1_B0363	KSU1_D0078	ADP-heptose--LPS heptosyltransferase.	Putative glycosyltransferase.	0.766
GAB61220.1	GAB63761.1	KSU1_B0363	KSU1_D0452	ADP-heptose--LPS heptosyltransferase.	Conserved hypothetical protein.	0.641
GAB61220.1	GAB63778.1	KSU1_B0363	KSU1_D0469	ADP-heptose--LPS heptosyltransferase.	Glycosyltransferase.	0.606
GAB61220.1	GAB63809.1	KSU1_B0363	KSU1_D0500	ADP-heptose--LPS heptosyltransferase.	Hydrolase.	0.895
GAB61220.1	GAB64295.1	KSU1_B0363	KSU1_D0986	ADP-heptose--LPS heptosyltransferase.	Putative D,D-heptose 1,7-bisphosphate phosphatase.	0.954
GAB61220.1	gmhA	KSU1_B0363	KSU1_D0987	ADP-heptose--LPS heptosyltransferase.	Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily.	0.731
GAB61220.1	hldE	KSU1_B0363	KSU1_D0988	ADP-heptose--LPS heptosyltransferase.	ADP-heptose synthase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.	0.855
GAB62978.1	GAB63776.1	KSU1_C1382	KSU1_D0467	Glycosyltransferase.	Heptosyltransferase.	0.519
GAB62978.1	GAB63777.1	KSU1_C1382	KSU1_D0468	Glycosyltransferase.	Glycosyltransferase.	0.648
GAB62978.1	GAB63778.1	KSU1_C1382	KSU1_D0469	Glycosyltransferase.	Glycosyltransferase.	0.628
GAB62978.1	GAB63806.1	KSU1_C1382	KSU1_D0497	Glycosyltransferase.	Glycosyltransferase.	0.781
GAB62978.1	GAB63807.1	KSU1_C1382	KSU1_D0498	Glycosyltransferase.	Carbamoyltransferase.	0.723
GAB62978.1	GAB63808.1	KSU1_C1382	KSU1_D0499	Glycosyltransferase.	Lipopolysaccharide heptosyltransferase.	0.556
GAB62978.1	hldE	KSU1_C1382	KSU1_D0988	Glycosyltransferase.	ADP-heptose synthase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.	0.404
GAB63387.1	GAB61220.1	KSU1_D0078	KSU1_B0363	Putative glycosyltransferase.	ADP-heptose--LPS heptosyltransferase.	0.766
GAB63387.1	GAB63777.1	KSU1_D0078	KSU1_D0468	Putative glycosyltransferase.	Glycosyltransferase.	0.548
GAB63387.1	GAB63778.1	KSU1_D0078	KSU1_D0469	Putative glycosyltransferase.	Glycosyltransferase.	0.689
GAB63387.1	GAB63809.1	KSU1_D0078	KSU1_D0500	Putative glycosyltransferase.	Hydrolase.	0.711
GAB63387.1	GAB64295.1	KSU1_D0078	KSU1_D0986	Putative glycosyltransferase.	Putative D,D-heptose 1,7-bisphosphate phosphatase.	0.649
GAB63387.1	gmhA	KSU1_D0078	KSU1_D0987	Putative glycosyltransferase.	Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily.	0.720