(37 nodes) Phosphorelay sensor kinase activity network (Pseudoalteromonas aliena)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQP98947.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1502 aa)
	AQP99073.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (890 aa)
	AQP99083.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	AQP99143.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1146 aa)
	B0W48_04800	DNA topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (726 aa)
	AQP99222.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (656 aa)
	AQQ02012.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1010 aa)
	AQQ02032.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (553 aa)
	AQP99510.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	AQP99667.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (718 aa)
	AQP99827.1	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (907 aa)
	AQP99854.1	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1119 aa)
	AQP99879.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (894 aa)
	AQP99890.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (936 aa)
	AQQ02068.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	AQQ00019.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1332 aa)
	AQQ00077.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
	AQQ00079.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1070 aa)
	AQQ00107.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (856 aa)
	AQQ00135.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (841 aa)
	AQQ00229.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1257 aa)
	AQQ00230.1	Diguanylate cyclase response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	AQQ00237.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1505 aa)
	AQQ00337.1	Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology. (772 aa)
	AQQ00344.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (925 aa)
	AQQ00414.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (627 aa)
	AQQ02088.1	Two-component sensor histidine kinase BarA; Derived by automated computational analysis using gene prediction method: Protein Homology. (928 aa)
	B0W48_13065	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (1101 aa)
	AQQ00898.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	AQQ00933.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (887 aa)
	AQQ02115.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	AQQ01180.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1018 aa)
	AQQ02128.1	Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	AQQ01589.1	GGDEF domain-containing response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (565 aa)
	AQQ01706.1	Bifunctional diguanylate cyclase/phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (751 aa)
	AQQ01798.1	GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (752 aa)
	AQQ02166.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)

Your Current Organism:

Pseudoalteromonas aliena

NCBI taxonomy Id: 247523
Other names: KMM 3562, LMG 22059, LMG:22059, P. aliena, Pseudoalteromonas aliena Ivanova et al. 2004, Pseudoalteromonas sp. KMM 3562, strain SW19

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQP98947.1	AQP99073.1	B0W48_03520	B0W48_04190	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AQP98947.1	AQP99083.1	B0W48_03520	B0W48_04245	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
AQP98947.1	AQP99143.1	B0W48_03520	B0W48_04560	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AQP98947.1	AQP99222.1	B0W48_03520	B0W48_05025	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
AQP98947.1	AQP99510.1	B0W48_03520	B0W48_06650	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
AQP98947.1	AQP99667.1	B0W48_03520	B0W48_07575	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
AQP98947.1	AQP99827.1	B0W48_03520	B0W48_08505	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
AQP98947.1	AQP99854.1	B0W48_03520	B0W48_08655	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AQP98947.1	AQP99879.1	B0W48_03520	B0W48_08790	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
AQP98947.1	AQP99890.1	B0W48_03520	B0W48_08855	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
AQP98947.1	AQQ00019.1	B0W48_03520	B0W48_09595	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AQP98947.1	AQQ00077.1	B0W48_03520	B0W48_09915	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AQP98947.1	AQQ00079.1	B0W48_03520	B0W48_09925	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
AQP98947.1	AQQ00107.1	B0W48_03520	B0W48_10080	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AQP98947.1	AQQ00135.1	B0W48_03520	B0W48_10220	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AQP98947.1	AQQ00229.1	B0W48_03520	B0W48_10730	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AQP98947.1	AQQ00230.1	B0W48_03520	B0W48_10735	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AQP98947.1	AQQ00237.1	B0W48_03520	B0W48_10775	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AQP98947.1	AQQ00337.1	B0W48_03520	B0W48_11325	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AQP98947.1	AQQ00344.1	B0W48_03520	B0W48_11360	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887

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