STRINGSTRING
Chro_0140 Chro_0140 Chro_0141 Chro_0141 Chro_0142 Chro_0142 Chro_0143 Chro_0143 Chro_0144 Chro_0144 Chro_2355 Chro_2355 Chro_2975 Chro_2975
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Chro_0140TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143:IPR003997; KEGG: ava:Ava_2861 secretion protein HlyD; PFAM: secretion protein HlyD family protein; SPTR: Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (440 aa)
Chro_0141Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: cyn:Cyan7425_4734 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein. (405 aa)
Chro_0142TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143:IPR003997; KEGG: gvi:gll0346 hypothetical protein; PFAM: secretion protein HlyD family protein; SPTR: Gll0346 protein; TIGRFAM: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (456 aa)
Chro_0143Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: gvi:gll0345 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: Gll0345 protein. (401 aa)
Chro_0144PFAM: ABC transporter; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: npu:Npun_F5129 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related. (245 aa)
Chro_2355Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: ttj:TTHA1008 ABC transporter, permease protein; PFAM: protein of unknown function DUF214; SPTR: Macrolide specific ABC-type transporter, ATP-binding protein. (394 aa)
Chro_2975PFAM: ABC transporter; TIGRFAM: ABC exporter ATP-binding subunit, DevA family; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871:IPR014324; KEGG: cyh:Cyan8802_3799 ABC exporter ATP-binding subunit, DevA family; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC exporter ATP-binding subunit, DevA family; TIGRFAM: ABC exporter ATP-binding subunit, DevA family. (246 aa)
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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