STRINGSTRING
Chro_5348 Chro_5348 Chro_0141 Chro_0141 Chro_0143 Chro_0143 Chro_0884 Chro_0884 Chro_2355 Chro_2355 Chro_3215 Chro_3215
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Chro_5348Protein of unknown function DUF214; PFAM: Predicted permease; TIGRFAM: DevC protein; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR005891:IPR003838; KEGG: cyc:PCC7424_2146 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Efflux ABC transporter, permease protein. (413 aa)
Chro_0141Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: cyn:Cyan7425_4734 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein. (405 aa)
Chro_0143Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: gvi:gll0345 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: Gll0345 protein. (401 aa)
Chro_0884Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: tdn:Suden_2043 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: Macrolide specific ABC-type transporter, ATP-binding protein. (393 aa)
Chro_2355Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: ttj:TTHA1008 ABC transporter, permease protein; PFAM: protein of unknown function DUF214; SPTR: Macrolide specific ABC-type transporter, ATP-binding protein. (394 aa)
Chro_3215Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: npu:Npun_F6383 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein. (424 aa)
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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