Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAQ01010.1 | EAQ04487.1 | OB2597_18841 | OB2597_10094 | COG0590 Cytosine/adenosine deaminases. | Protease, putative; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone. | 0.472 |
| EAQ01010.1 | tilS | OB2597_18841 | OB2597_15675 | COG0590 Cytosine/adenosine deaminases. | PP-loop family protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.471 |
| EAQ01010.1 | ttcA | OB2597_18841 | OB2597_07690 | COG0590 Cytosine/adenosine deaminases. | Hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.435 |
| EAQ01131.1 | rlmN | OB2597_14274 | OB2597_11256 | MiaB-like Radical SAM protein; COG0621 2-methylthioadenine synthetase. | Radical SAM superfamily protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.587 |
| EAQ01131.1 | rph | OB2597_14274 | OB2597_12518 | MiaB-like Radical SAM protein; COG0621 2-methylthioadenine synthetase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.631 |
| EAQ02995.1 | EAQ04441.1 | OB2597_12663 | OB2597_09864 | Hypothetical protein; COG0802 Predicted ATPase or kinase. | Putative translation factor; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | 0.522 |
| EAQ02995.1 | EAQ04487.1 | OB2597_12663 | OB2597_10094 | Hypothetical protein; COG0802 Predicted ATPase or kinase. | Protease, putative; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone. | 0.995 |
| EAQ02995.1 | miaA | OB2597_12663 | OB2597_01752 | Hypothetical protein; COG0802 Predicted ATPase or kinase. | Probable tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.428 |
| EAQ02995.1 | mnmA | OB2597_12663 | OB2597_01822 | Hypothetical protein; COG0802 Predicted ATPase or kinase. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.407 |
| EAQ02995.1 | trmD | OB2597_12663 | OB2597_13183 | Hypothetical protein; COG0802 Predicted ATPase or kinase. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.551 |
| EAQ02995.1 | tsaD | OB2597_12663 | OB2597_12728 | Hypothetical protein; COG0802 Predicted ATPase or kinase. | O-sialoglycoprotein endopeptidase, putative; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.978 |
| EAQ03466.1 | mnmA | OB2597_02562 | OB2597_01822 | SirA family protein; COG0425 Predicted redox protein, regulator of disulfide bond formation; Belongs to the sulfur carrier protein TusA family. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.467 |
| EAQ03534.1 | trmD | OB2597_02902 | OB2597_13183 | RNA methyltransferase, TrmH family, group 1; COG0565 rRNA methylase. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.416 |
| EAQ03573.1 | trmB | OB2597_03097 | OB2597_14811 | tRNA-dihydrouridine synthase, putative; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.494 |
| EAQ03573.1 | trmD | OB2597_03097 | OB2597_13183 | tRNA-dihydrouridine synthase, putative; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.740 |
| EAQ03573.1 | truA | OB2597_03097 | OB2597_04405 | tRNA-dihydrouridine synthase, putative; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.444 |
| EAQ04091.1 | mnmG | OB2597_08114 | OB2597_12553 | Hypothetical protein. | Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.679 |
| EAQ04091.1 | rnc | OB2597_08114 | OB2597_11406 | Hypothetical protein. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.479 |
| EAQ04091.1 | trmD | OB2597_08114 | OB2597_13183 | Hypothetical protein. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.640 |
| EAQ04441.1 | EAQ02995.1 | OB2597_09864 | OB2597_12663 | Putative translation factor; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | Hypothetical protein; COG0802 Predicted ATPase or kinase. | 0.522 |
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