(42 nodes) Ribosome assembly network (Verruconis gallopava)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV09_05895	Rsa3 domain-containing protein. (137 aa)
	PV09_06862	40S ribosomal protein S28. (68 aa)
	PV09_03386	60S ribosomal protein L10-A. (221 aa)
	PV09_02523	Uncharacterized protein. (268 aa)
	PV09_07495	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (314 aa)
	PV09_07620	Uncharacterized protein. (305 aa)
	PV09_08413	Uncharacterized protein. (1797 aa)
	PV09_08726	Ribosomal_L23eN domain-containing protein. (153 aa)
	PV09_09621	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (345 aa)
	PV09_00885	Uncharacterized protein. (360 aa)
	PV09_01457	RNA helicase. (610 aa)
	PV09_04019	SBDS family rRNA metabolism protein. (309 aa)
	PV09_03958	Uncharacterized protein. (802 aa)
	PV09_05058	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (237 aa)
	PV09_06212	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4831 aa)
	PV09_07102	WD_REPEATS_REGION domain-containing protein. (520 aa)
	PV09_00405	Uncharacterized protein. (361 aa)
	PV09_01816	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (152 aa)
	PV09_02321	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	PV09_05116	Tr-type G domain-containing protein. (1108 aa)
	PV09_06501	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (190 aa)
	PV09_08816	40S ribosomal protein S19. (150 aa)
	PV09_08935	W2 domain-containing protein. (425 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (246 aa)
	PV09_02324	Uncharacterized protein. (1069 aa)
	PV09_08788	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (435 aa)
	PV09_08669	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (212 aa)
	PV09_02160	WD_REPEATS_REGION domain-containing protein. (887 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (295 aa)
	PV09_00403	Brix domain-containing protein. (311 aa)
	PV09_05389	60S ribosomal protein L5. (302 aa)
	PV09_06410	Uncharacterized protein. (331 aa)
	PV09_05567	Uncharacterized protein. (200 aa)
	PV09_05591	Uncharacterized protein. (334 aa)
	PV09_01152	Brix domain-containing protein. (453 aa)
	PV09_01251	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	PV09_00529	Uncharacterized protein. (822 aa)
	PV09_01659	Brix domain-containing protein. (322 aa)
	PV09_00034	CP-type G domain-containing protein. (675 aa)
	PV09_04311	Uncharacterized protein. (507 aa)
	PV09_05563	Uncharacterized protein. (307 aa)
	PV09_06185	Ribosomal_S7 domain-containing protein. (356 aa)

Your Current Organism:

Verruconis gallopava

NCBI taxonomy Id: 253628
Other names: ATCC 16027, CBS 437.64, CDC 45-492-62, Dactylaria gallopava, MUCL 6683, Ochroconis gallopava, Scolecobasidium gallopavum, V. gallopava, Verruconis gallopava (W.B. Cooke) Samerpitak & de Hoog, 2014

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV09_00034	PV09_00403	A0A0D2BCJ1	A0A0D2AS73	CP-type G domain-containing protein.	Brix domain-containing protein.	0.856
PV09_00034	PV09_00405	A0A0D2BCJ1	A0A0D1Y3N6	CP-type G domain-containing protein.	Uncharacterized protein.	0.856
PV09_00034	PV09_00529	A0A0D2BCJ1	A0A0D2BBA8	CP-type G domain-containing protein.	Uncharacterized protein.	0.515
PV09_00034	PV09_01152	A0A0D2BCJ1	A0A0D2BA88	CP-type G domain-containing protein.	Brix domain-containing protein.	0.765
PV09_00034	PV09_01457	A0A0D2BCJ1	A0A0D1Z3H9	CP-type G domain-containing protein.	RNA helicase.	0.726
PV09_00034	PV09_01659	A0A0D2BCJ1	A0A0D2B8Z9	CP-type G domain-containing protein.	Brix domain-containing protein.	0.934
PV09_00034	PV09_02160	A0A0D2BCJ1	A0A0D2ALA8	CP-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.881
PV09_00034	PV09_03386	A0A0D2BCJ1	A0A0D2AEY1	CP-type G domain-containing protein.	60S ribosomal protein L10-A.	0.946
PV09_00034	PV09_03958	A0A0D2BCJ1	A0A0D1YVN9	CP-type G domain-containing protein.	Uncharacterized protein.	0.874
PV09_00034	PV09_04019	A0A0D2BCJ1	A0A0D1YVW3	CP-type G domain-containing protein.	SBDS family rRNA metabolism protein.	0.585
PV09_00034	PV09_04311	A0A0D2BCJ1	A0A0D2AZP5	CP-type G domain-containing protein.	Uncharacterized protein.	0.551
PV09_00034	PV09_05058	A0A0D2BCJ1	A0A0D1YSY3	CP-type G domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.862
PV09_00034	PV09_05116	A0A0D2BCJ1	A0A0D1XMN7	CP-type G domain-containing protein.	Tr-type G domain-containing protein.	0.497
PV09_00034	PV09_05389	A0A0D2BCJ1	A0A0D2AWU7	CP-type G domain-containing protein.	60S ribosomal protein L5.	0.947
PV09_00034	PV09_05563	A0A0D2BCJ1	A0A0D2A9R8	CP-type G domain-containing protein.	Uncharacterized protein.	0.449
PV09_00034	PV09_05567	A0A0D2BCJ1	A0A0D2AW22	CP-type G domain-containing protein.	Uncharacterized protein.	0.908
PV09_00034	PV09_06212	A0A0D2BCJ1	A0A0D1YNX1	CP-type G domain-containing protein.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.473
PV09_00034	PV09_06410	A0A0D2BCJ1	A0A0D2ASX5	CP-type G domain-containing protein.	Uncharacterized protein.	0.482
PV09_00034	PV09_06501	A0A0D2BCJ1	A0A0D1XI86	CP-type G domain-containing protein.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.840
PV09_00034	PV09_07102	A0A0D2BCJ1	A0A0D1YKC8	CP-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.704

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