Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PAN2 | PV09_00136 | A0A0D2AZ75 | A0A0D2AR70 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] | Uncharacterized protein. | 0.538 |
| PAN2 | PV09_01415 | A0A0D2AZ75 | A0A0D2APW4 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] | Exonuclease domain-containing protein. | 0.679 |
| PAN2 | PV09_05221 | A0A0D2AZ75 | A0A0D1XM15 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] | POLAc domain-containing protein. | 0.530 |
| PAN2 | PV09_06179 | A0A0D2AZ75 | A0A0D1YNS9 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] | Uncharacterized protein. | 0.453 |
| PAN2 | PV09_08478 | A0A0D2AZ75 | A0A0D2A010 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] | RNase H domain-containing protein. | 0.476 |
| PV09_00136 | PAN2 | A0A0D2AR70 | A0A0D2AZ75 | Uncharacterized protein. | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] | 0.538 |
| PV09_00136 | PV09_01416 | A0A0D2AR70 | A0A0D1Y0H3 | Uncharacterized protein. | DNA polymerase. | 0.686 |
| PV09_00136 | PV09_06179 | A0A0D2AR70 | A0A0D1YNS9 | Uncharacterized protein. | Uncharacterized protein. | 0.434 |
| PV09_00446 | PV09_00728 | A0A0D2ASA3 | A0A0D2BBP5 | Pre-mRNA-processing-splicing factor 8, variant. | Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. | 0.418 |
| PV09_00728 | PV09_00446 | A0A0D2BBP5 | A0A0D2ASA3 | Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. | Pre-mRNA-processing-splicing factor 8, variant. | 0.418 |
| PV09_01415 | PAN2 | A0A0D2APW4 | A0A0D2AZ75 | Exonuclease domain-containing protein. | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] | 0.679 |
| PV09_01415 | PV09_01845 | A0A0D2APW4 | A0A0D1XYT6 | Exonuclease domain-containing protein. | Exonuclease domain-containing protein. | 0.905 |
| PV09_01415 | PV09_05192 | A0A0D2APW4 | A0A0D1YS16 | Exonuclease domain-containing protein. | Exonuclease domain-containing protein. | 0.923 |
| PV09_01415 | PV09_08478 | A0A0D2APW4 | A0A0D2A010 | Exonuclease domain-containing protein. | RNase H domain-containing protein. | 0.438 |
| PV09_01415 | PV09_09085 | A0A0D2APW4 | A0A0D1YEQ3 | Exonuclease domain-containing protein. | Exonuclease domain-containing protein. | 0.804 |
| PV09_01415 | PV09_09567 | A0A0D2APW4 | A0A0D2AIA9 | Exonuclease domain-containing protein. | Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.545 |
| PV09_01416 | PV09_00136 | A0A0D1Y0H3 | A0A0D2AR70 | DNA polymerase. | Uncharacterized protein. | 0.686 |
| PV09_01416 | PV09_01740 | A0A0D1Y0H3 | A0A0D1XYD8 | DNA polymerase. | DNA polymerase. | 0.411 |
| PV09_01416 | PV09_05359 | A0A0D1Y0H3 | A0A0D1XMB4 | DNA polymerase. | DNA polymerase. | 0.915 |
| PV09_01416 | PV09_07181 | A0A0D1Y0H3 | A0A0D1YKP7 | DNA polymerase. | 3'-5' exonuclease domain-containing protein. | 0.408 |
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