STRINGSTRING
PV09_08075 PV09_08075 PV09_07469 PV09_07469 PV09_07181 PV09_07181 PV09_07575 PV09_07575 PV09_09062 PV09_09062 PV09_06885 PV09_06885 PV09_01649 PV09_01649 PV09_02296 PV09_02296 PV09_03056 PV09_03056 PV09_03371 PV09_03371 PV09_04436 PV09_04436 PV09_04950 PV09_04950 PV09_05044 PV09_05044 PV09_05518 PV09_05518 PV09_05839 PV09_05839 PV09_06179 PV09_06179 PV09_06404 PV09_06404 PV09_01015 PV09_01015 PV09_09460 PV09_09460 PV09_09220 PV09_09220 PV09_09491 PV09_09491 PV09_09015 PV09_09015 PV09_08807 PV09_08807 PV09_08737 PV09_08737 PV09_08773 PV09_08773 PV09_08316 PV09_08316 PV09_08527 PV09_08527 PV09_08195 PV09_08195 PV09_08197 PV09_08197 PV09_07155 PV09_07155 LSM5 LSM5 PV09_07436 PV09_07436 LSM1 LSM1 PV09_07162 PV09_07162 PV09_06858 PV09_06858 PV09_06800 PV09_06800 PV09_05812 PV09_05812 LSM3 LSM3 PV09_05038 PV09_05038 PV09_05134 PV09_05134 PV09_06753 PV09_06753 PV09_04688 PV09_04688 PV09_04546 PV09_04546 PV09_09464 PV09_09464 PV09_00295 PV09_00295 LSM4 LSM4 PV09_04116 PV09_04116 PV09_05179 PV09_05179 PV09_05011 PV09_05011 PV09_05898 PV09_05898 PV09_06611 PV09_06611 PV09_06535 PV09_06535 PV09_04226 PV09_04226 PV09_03775 PV09_03775 PV09_03396 PV09_03396 PV09_03881 PV09_03881 PV09_03121 PV09_03121 PV09_09841 PV09_09841 PV09_03196 PV09_03196 PV09_03221 PV09_03221 PV09_09661 PV09_09661 PV09_02292 PV09_02292 PV09_09495 PV09_09495 PV09_09461 PV09_09461 PV09_02980 PV09_02980 PV09_02490 PV09_02490 PV09_02027 PV09_02027 PV09_08997 PV09_08997 PV09_02624 PV09_02624 PV09_01507 PV09_01507 PV09_01427 PV09_01427 PV09_01813 PV09_01813 PV09_00977 PV09_00977 PV09_01036 PV09_01036 PV09_01045 PV09_01045 PV09_07806 PV09_07806 PV09_01180 PV09_01180 PV09_07736 PV09_07736 PV09_01286 PV09_01286 PV09_07563 PV09_07563 PV09_00122 PV09_00122 PV09_00136 PV09_00136 PV09_06760 PV09_06760 PV09_00396 PV09_00396 PV09_00464 PV09_00464 PV09_05948 PV09_05948 LSM8 LSM8 PV09_05461 PV09_05461 PV09_05525 PV09_05525 PV09_05290 PV09_05290 PV09_04545 PV09_04545 PAN2 PAN2 PAN3 PAN3 PV09_03605 PV09_03605 PV09_01525 PV09_01525 PV09_01792 PV09_01792 PV09_00754 PV09_00754 PV09_00870 PV09_00870 PV09_00412 PV09_00412
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV09_08075HRDC domain-containing protein. (891 aa)
PV09_074692-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2. (332 aa)
PV09_071813'-5' exonuclease domain-containing protein. (1146 aa)
PV09_07575Uncharacterized protein. (266 aa)
PV09_09062Uncharacterized protein. (1077 aa)
PV09_06885Enolase. (438 aa)
PV09_01649ECR1_N domain-containing protein. (346 aa)
PV09_02296RNB domain-containing protein. (1351 aa)
PV09_03056NOT2_3_5 domain-containing protein. (416 aa)
PV09_03371NTP_transf_2 domain-containing protein. (580 aa)
PV09_04436NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX. (258 aa)
PV09_04950T-complex protein 1 subunit delta. (528 aa)
PV09_05044Uncharacterized protein. (554 aa)
PV09_05518cobW domain-containing protein. (388 aa)
PV09_05839T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (560 aa)
PV09_06179Uncharacterized protein. (606 aa)
PV09_06404Uncharacterized protein. (220 aa)
PV09_01015Uncharacterized protein. (2256 aa)
PV09_09460Helicase C-terminal domain-containing protein. (249 aa)
PV09_09220WW domain-containing protein. (300 aa)
PV09_09491DEAD domain-containing protein. (259 aa)
PV09_090152-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2; Belongs to the DPH1/DPH2 family. DPH2 subfamily. (561 aa)
PV09_08807Uncharacterized protein. (776 aa)
PV09_08737Uncharacterized protein. (86 aa)
PV09_08773RNase_PH domain-containing protein. (321 aa)
PV09_08316Uncharacterized protein. (275 aa)
PV09_08527ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family. (513 aa)
PV09_08195Uncharacterized protein. (787 aa)
PV09_08197F-box domain-containing protein. (521 aa)
PV09_07155Uncharacterized protein. (453 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (104 aa)
PV09_07436Uncharacterized protein. (320 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (156 aa)
PV09_07162Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (210 aa)
PV09_06858U6 snRNA-associated Sm-like protein LSm6. (80 aa)
PV09_06800T-complex protein 1 subunit alpha. (578 aa)
PV09_05812T-complex protein 1, zeta subunit. (541 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
PV09_05038Nudix hydrolase domain-containing protein. (1045 aa)
PV09_05134Uncharacterized protein. (190 aa)
PV09_06753Uncharacterized protein. (326 aa)
PV09_04688T-complex protein 1 subunit epsilon. (548 aa)
PV09_04546Uncharacterized protein. (731 aa)
PV09_09464Uncharacterized protein. (689 aa)
PV09_00295Uncharacterized protein. (344 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (128 aa)
PV09_04116Uncharacterized protein. (509 aa)
PV09_05179RNase_PH domain-containing protein. (194 aa)
PV09_05011Uncharacterized protein. (1395 aa)
PV09_05898Uncharacterized protein. (1421 aa)
PV09_06611YL1_C domain-containing protein. (812 aa)
PV09_06535Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (739 aa)
PV09_04226Sm domain-containing protein. (135 aa)
PV09_03775WD_REPEATS_REGION domain-containing protein. (328 aa)
PV09_03396Uncharacterized protein. (939 aa)
PV09_03881Uncharacterized protein. (434 aa)
PV09_03121Hsp7-like protein; Belongs to the heat shock protein 70 family. (669 aa)
PV09_09841Uncharacterized protein. (839 aa)
PV09_03196cobW domain-containing protein. (396 aa)
PV09_03221Uncharacterized protein. (278 aa)
PV09_09661Uncharacterized protein. (1340 aa)
PV09_02292Uncharacterized protein; Belongs to the RNR ribonuclease family. (983 aa)
PV09_09495Uncharacterized protein. (365 aa)
PV09_09461DEAD domain-containing protein. (271 aa)
PV09_02980RNase_PH domain-containing protein. (367 aa)
PV09_02490Uncharacterized protein. (391 aa)
PV09_020275'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1466 aa)
PV09_08997Uncharacterized protein. (973 aa)
PV09_02624Cell differentiation protein rcd1. (387 aa)
PV09_01507CCHC-type domain-containing protein. (764 aa)
PV09_01427PH domain-containing protein. (983 aa)
PV09_01813Uncharacterized protein. (208 aa)
PV09_00977Uncharacterized protein. (778 aa)
PV09_01036Importin N-terminal domain-containing protein. (1053 aa)
PV09_01045Uncharacterized protein. (1280 aa)
PV09_07806Uncharacterized protein. (299 aa)
PV09_01180Uncharacterized protein. (1416 aa)
PV09_07736RNase_PH domain-containing protein. (290 aa)
PV09_01286ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (800 aa)
PV09_07563Uncharacterized protein. (346 aa)
PV09_00122RNB domain-containing protein. (1064 aa)
PV09_00136Uncharacterized protein. (489 aa)
PV09_06760PAT1 domain-containing protein. (844 aa)
PV09_00396RNase_PH domain-containing protein. (346 aa)
PV09_00464Uncharacterized protein. (324 aa)
PV09_05948Uncharacterized protein. (761 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (101 aa)
PV09_05461Phosphopyruvate hydratase. (451 aa)
PV09_05525T-complex protein 1 subunit beta. (530 aa)
PV09_05290ABC transporter domain-containing protein. (285 aa)
PV09_04545Uncharacterized protein. (929 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1165 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (648 aa)
PV09_03605Uncharacterized protein. (1468 aa)
PV09_015255'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1032 aa)
PV09_01792Uncharacterized protein. (345 aa)
PV09_00754T-complex protein 1 subunit gamma. (541 aa)
PV09_00870Uncharacterized protein. (635 aa)
PV09_00412Uncharacterized protein. (250 aa)
Your Current Organism:
Verruconis gallopava
NCBI taxonomy Id: 253628
Other names: ATCC 16027, CBS 437.64, CDC 45-492-62, Dactylaria gallopava, MUCL 6683, Ochroconis gallopava, Scolecobasidium gallopavum, V. gallopava, Verruconis gallopava (W.B. Cooke) Samerpitak & de Hoog, 2014
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