(23 nodes) Lipid homeostasis network (Penicillium flavigenum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6TUE8	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (632 aa)
	A0A1V6U252	PNPLA domain-containing protein. (363 aa)
	A0A1V6U314	Zn(2)-C6 fungal-type domain-containing protein. (1415 aa)
	A0A1V6TMC8	Uncharacterized protein; Belongs to the cytochrome P450 family. (493 aa)
	A0A1V6TSL5	SIS domain-containing protein. (663 aa)
	A0A1V6SW85	AB hydrolase-1 domain-containing protein. (347 aa)
	A0A1V6T0T9	Uncharacterized protein. (148 aa)
	A0A1V6T5L1	AB hydrolase-1 domain-containing protein. (528 aa)
	A0A1V6TNN0	Proline iminopeptidase; Belongs to the peptidase S33 family. (325 aa)
	A0A1V6SK68	Uncharacterized protein. (202 aa)
	A0A1V6S289	Uncharacterized protein. (954 aa)
	A0A1V6SKV1	Uncharacterized protein; Belongs to the glycosyl hydrolase 43 family. (325 aa)
	A0A1V6S898	Uncharacterized protein. (945 aa)
	A0A1V6SD94	Uncharacterized protein. (516 aa)
	A0A1V6SPS0	Uncharacterized protein. (871 aa)
	A0A1V6SQ81	Uncharacterized protein. (273 aa)
	A0A1V6SQI2	Uncharacterized protein; Belongs to the cytochrome P450 family. (193 aa)
	A0A1V6SGG6	Uncharacterized protein. (568 aa)
	A0A1V6SE91	Uncharacterized protein. (1652 aa)
	A0A1V6SSZ1	Uncharacterized protein. (666 aa)
	A0A1V6STQ3	AB hydrolase-1 domain-containing protein. (602 aa)
	A0A1V6STZ2	Brr6_like_C_C domain-containing protein. (447 aa)
	A0A1V6SVM7	Uncharacterized protein. (202 aa)

Your Current Organism:

Penicillium flavigenum

NCBI taxonomy Id: 254877
Other names: CBS 419.89, IBT 21526, IBT 3091, IBT V1035, IMI 293207, P. flavigenum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6SD94	A0A1V6SGG6	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1V6SD94	A0A1V6T0T9	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1V6SGG6	A0A1V6SD94	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1V6SGG6	A0A1V6SPS0	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1V6SGG6	A0A1V6STQ3	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.539
A0A1V6SGG6	A0A1V6SW85	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.539
A0A1V6SGG6	A0A1V6TNN0	Uncharacterized protein.	Proline iminopeptidase; Belongs to the peptidase S33 family.	0.539
A0A1V6SPS0	A0A1V6SGG6	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1V6SPS0	A0A1V6T0T9	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1V6STQ3	A0A1V6SGG6	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.539
A0A1V6STQ3	A0A1V6T0T9	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.539
A0A1V6SW85	A0A1V6SGG6	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.539
A0A1V6SW85	A0A1V6T0T9	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.539
A0A1V6T0T9	A0A1V6SD94	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1V6T0T9	A0A1V6SPS0	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1V6T0T9	A0A1V6STQ3	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.539
A0A1V6T0T9	A0A1V6SW85	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.539
A0A1V6T0T9	A0A1V6TNN0	Uncharacterized protein.	Proline iminopeptidase; Belongs to the peptidase S33 family.	0.539
A0A1V6TNN0	A0A1V6SGG6	Proline iminopeptidase; Belongs to the peptidase S33 family.	Uncharacterized protein.	0.539
A0A1V6TNN0	A0A1V6T0T9	Proline iminopeptidase; Belongs to the peptidase S33 family.	Uncharacterized protein.	0.539