STRINGSTRING
BP0836 BP0836 BP0837 BP0837 BP1547 BP1547 BP1548 BP1548 BP1907 BP1907 BP2342 BP2342 BP2792 BP2792 dltB dltB dltD dltD BP3467 BP3467 BP3468 BP3468 BP3749 BP3749
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BP0836Putative exported protein; Similar to Rhizobium meliloti putative oxidoreductase protein Smc01572 TR:CAC46902 (EMBL:AL591790) (155 aa) fasta scores: E(): 0.00047, 32.593% id in 135 aa, and to Rhizobium loti probable oxidoreductase Mlr0254 TR:Q98N82 (EMBL:AP002994) (305 aa) fasta scores: E(): 0.016, 30.075% id in 133 aa. (144 aa)
BP0837Similar to Pseudomonas aeruginosa hypothetical protein Pa4093 TR:Q9HWT5 (EMBL:AE004825) (138 aa) fasta scores: E(): 1.2e-09, 40.164% id in 122 aa, and to Rhizobium meliloti hypothetical transmembrane protein Smc01805 TR:CAC45823 (EMBL:AL591786) (143 aa) fasta scores: E(): 3e-08, 34.815% id in 135 aa. (144 aa)
BP1547Conserved hypothetical protein; Weakly similar to Caulobacter crescentus hypothetical protein Cc3537 TR:Q9A2M0 (EMBL:AE006012) (996 aa) fasta scores: E(): 1.6e-09, 26.54% id in 859 aa. (886 aa)
BP1548Putative nuclease/helicase; Similar to Escherichia coli exodeoxyribonuclease V beta chain RecB or RorA or B2820 SW:EX5B_ECOLI (P08394) (1180 aa) fasta scores: E(): 0.0011, 23.34% id in 1118 aa, and to Rhizobium meliloti putative ATP-dependent nuclease/helicase protein Smc02760 TR:CAC41421 (EMBL:AL591782) (1189 aa) fasta scores: E(): 6.7e-17, 27.9% id in 1229 aa; Belongs to the helicase family. UvrD subfamily. (1134 aa)
BP1907Putative exported protein; Similar to Rhodobacter sphaeroides hypothetical 21.1 kDa protein putative Orf TR:Q53172 (EMBL:Z50182) (197 aa) fasta scores: E(): 0.41, 29.33% id in 150 aa, and to Desulfotomaculum thermocisternum hypothetical 25.2 kDa protein TR:Q9ZH15 (EMBL:AF074396) (224 aa) fasta scores: E(): 0.098, 25.98% id in 127 aa. (227 aa)
BP2342Hypothetical protein; Weakly similar to Escherichia coli O157:H7 EDL933 hypothetical protein YrbL TR:AAG58341 (EMBL:AE005548) (210 aa) fasta scores: E(): 0.023, 26.57% id in 207 aa. Also similar to BP3672, 45.673% identity (47.500% ungapped) in 208 aa overlap. (219 aa)
BP2792Hypothetical protein; No significant database hits. (278 aa)
dltBPutative protein involved in the transfer of D-alanine into teichoic acids; Similar to Bacillus subtilis protein DltB thought to be involved in D-alanine transport SW:DLTB_BACSU (P39580) (395 aa) fasta scores: E(): 5.5e-25, 33.68% id in 282 aa, and to Lactococcus lactis peptidoglycan biosynthesis protein DltB TR:Q9CG50 (EMBL:AE006358) (407 aa) fasta scores: E(): 1.8e-23, 34.69% id in 245 aa; Belongs to the membrane-bound acyltransferase family. (375 aa)
dltDPutative protein involved in the transfer of D-alanine into teichoic acids; Similar to Staphylococcus xylosus DltD dltD SWALL:Q9X2N7 (EMBL:AF032440) (382 aa) fasta scores: E(): 3.8e-07, 21.71% id in 327 aa, and to Streptococcus agalactiae secreted protein, DltD dltD SWALL:Q8VM64 (EMBL:AJ291784) (420 aa) fasta scores: E(): 0.00019, 22.72% id in 330 aa. (375 aa)
BP3467Putative exported protein; Similar to Escherichia coli suppressor of OmpF assembly mutants, outer membrane protein AsmA SW:ASMA_ECOLI (P28249) (617 aa) fasta scores: E(): 0.0063, 23.79% id in 395 aa, and to Vibrio cholerae AsmA protein VC1039 TR:Q9KT66 (EMBL:AE004185) (703 aa) fasta scores: E(): 5.5e-20, 25.44% id in 837 aa. (839 aa)
BP3468Hypothetical protein; Poor database matches. Similar to the N-terminal regions of Streptomyces coelicolor hypothetical protein SCG20A.02 TR:Q9K3N8 (EMBL:AL360055) (275 aa) fasta scores: E(): 0.025, 29.6% id in 125 aa, and Pseudomonas aeruginosa hypothetical protein PA3022 TR:Q9HZI4 (EMBL:AE004727) (268 aa) fasta scores: E(): 0.015, 31.06% id in 103 aa. (128 aa)
BP3749Putative membrane protein; Poor database matches. Similar to Pseudomonas aeruginosa hypothetical protein PA1825 TR:Q9I2S0 (EMBL:AE004609) (214 aa) fasta scores: E(): 1.1e-07, 28.64% id in 199 aa. (212 aa)
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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