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| | BP0017 | Putative lipoprotein; No significant database matches. (134 aa) |
| | BP0022 | Probable two-component response regulator (Pseudogene); HMMPfam hit to PF00072, Response regulator receiver domain. (271 aa) |
| | BP0156 | Putative exported protein; Similar to Pasteurella multocida hypothetical protein Pm1939 TR:Q9CJQ5 (EMBL:AE006230) (151 aa) fasta scores: E(): 1.5e-25, 51.370% id in 146 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4714 TR:Q9HV84 (EMBL:AE004885) (149 aa) fasta scores: E(): 8.1e-21, 46.853% id in 143 aa. (153 aa) |
| | BP0157 | Two-component sensor kinase; Member of a two-component regulatory system. (465 aa) |
| | BP0158 | Two-component response regulator; Similar to Escherichia coli transcriptional regulatory protein PcoR SW:PCOR_ECOLI (Q47456) (226 aa) fasta scores: E(): 4.7e-46, 53.846% id in 221 aa, and to Pseudomonas aeruginosa probable two-component response regulator Pa1437 TR:Q9I3R0 (EMBL:AE004573) (229 aa) fasta scores: E(): 9.4e-56, 63.393% id in 224 aa. (225 aa) |
| | phoR | Similar to Escherichia coli phosphate regulon sensor protein PhoR or NmpB or B0400 SW:PHOR_ECOLI (P08400) (431 aa) fasta scores: E(): 1e-55, 41.458% id in 439 aa, and to Klebsiella pneumoniae phosphate regulon sensor protein PhoR SW:PHOR_KLEPN (P45608) (431 aa) fasta scores: E(): 3.2e-55, 40.961% id in 437 aa. (436 aa) |
| | phoB | Similar to Escherichia coli phosphate regulon transcriptional regulatory protein PhoB or B0399 or Z0497 or ECS0449 SW:PHOB_ECOLI (P08402) (229 aa) fasta scores: E(): 2.6e-52, 59.211% id in 228 aa, and to Vibrio cholerae DNA-binding response regulator PhoB or VC0719 TR:Q9KU11 (EMBL:AE004158) (229 aa) fasta scores: E(): 1.3e-54, 60.526% id in 228 aa. (232 aa) |
| | mscL | Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. (152 aa) |
| | BP0314 | Similar to Vibrio cholerae hypothetical protein Vca1085 TR:Q9KKL8 (EMBL:AE004434) (556 aa) fasta scores: E(): 3.5e-23, 27.632% id in 456 aa, and to Thermotoga maritima conserved hypothetical protein Tm0735 TR:Q9WZJ4 (EMBL:AE001744) (455 aa) fasta scores: E(): 2.1e-13, 30.947% id in 475 aa. (541 aa) |
| | BP0337 | Putative exported protein (pseudogene); Pseudogen. The N-terminal region of this CDS is deleted relative to its orthologues in B. pertussis and B. bronchiseptica. Similar to the C-reminal regions of Rhizobium meliloti conserved hypothetical protein Sma0690 TR:AAK65024 (EMBL:AE007228) (466 aa) fasta scores: E(): 2.3e-08, 28.617% id in 311 aa, and to Escherichia coli hypothetical protein YacH or B0117 SW:YACH_ECOLI (P36682) (617 aa) fasta scores: E(): 8.7e-11, 30.357% id in 280 aa. (276 aa) |
| | BP0338 | Putative membrane protein; No significant database matches. (380 aa) |
| | BP0501 | C-terminal region of two component sensor kinase (partial); Partial. This CDS is the C-terminal region of BP3351 which was disrupted by the integration of a prophage. Similar to Salmonella enterica TctE TR:Q9FA47 (EMBL:AF020810) (488 aa) fasta scores: E(): 1.5e-21, 30.079% id in 379 aa, and to Pseudomonas aeruginosa probable two-component sensor Pa0757 TR:Q9I5H2 (EMBL:AE004510) (460 aa) fasta scores: E(): 4.6e-24, 37.500% id in 376 aa. (425 aa) |
| | BP0568 | Putative amino acid efflux protein; Similar to Escherichia coli homoserine/homoserine lactone efflux protein RhtB or B3824 SW:RHTB_ECOLI (P27847) (206 aa) fasta scores: E(): 1.6e-14, 31.100% id in 209 aa, and to Rhizobium meliloti putative amino acid efflux transmembrane protein Smc02981 TR:CAC47452 (EMBL:AL591792) (211 aa) fasta scores: E(): 1.3e-40, 58.852% id in 209 aa. (209 aa) |
| | BP0569 | Conserved hypothetical protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (444 aa) |
| | BP0570 | Putative exported protein; Similar to Neisseria meningitidis hypothetical protein Nma0161 TR:Q9JWZ1 (EMBL:AL162752) (199 aa) fasta scores: E(): 3.5e-12, 31.088% id in 193 aa, and to Neisseria meningitidis hypothetical protein Nmb0113 TR:Q9K1K4 (EMBL:AE002370) (180 aa) fasta scores: E(): 5.1e-11, 32.278% id in 158 aa. (203 aa) |
| | BP0571 | Putative two-component sensor kinase; Similar to Azorhizobium caulinodans nitrogen regulation protein NtrY SW:NTRY_AZOCA (Q04850) (771 aa) fasta scores: E(): 8.8e-14, 29.107% id in 773 aa, and to Neisseria meningitidis nitrogen regulation protein NtrY, putative Nmb0114 TR:Q9K1K3 (EMBL:AE002370) (706 aa) fasta scores: E(): 6.2e-41, 37.748% id in 755 aa. (769 aa) |
| | BP0572 | Putative two-component response regulator; Similar to Salmonella typhimurium transcriptional regulatory protein HydG SW:HYDG_SALTY (P25852) (441 aa) fasta scores: E(): 7.1e-09, 35.849% id in 159 aa, and to Neisseria meningitidis putative two-component trancriptional regulator Nma0159 TR:Q9JWZ3 (EMBL:AL162752) (425 aa) fasta scores: E(): 1.2e-25, 53.939% id in 165 aa. (229 aa) |
| | trkA | Similar to Escherichia coli Trk system potassium uptake protein TrkA or B3290 or Z4660 or Ecs4155 SW:TRKA_ECOLI (P23868) (458 aa) fasta scores: E(): 6.9e-78, 48.478% id in 460 aa, and to Salmonella typhimurium Trk system potassium uptake protein TrkA or SapG SW:TRKA_SALTY (P39445) (458 aa) fasta scores: E(): 1.8e-78, 48.913% id in 460 aa. (459 aa) |
| | trkH | Trk system potassium uptake protein; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (489 aa) |
| | BP0575 | Similar to Escherichia coli transcriptional regulator protein SlyA TR:Q9F8R8 (EMBL:AF242208) (135 aa) fasta scores: E(): 2.1e-06, 29.630% id in 135 aa, and to Streptomyces coelicolor putative transcriptional regulator Sc4c6.14 TR:Q9XAM6 (EMBL:AL079355) (154 aa) fasta scores: E(): 8.9e-15, 40.000% id in 135 aa. (155 aa) |
| | BP0785 | Putative mechanosensitive channel protein; Similar to Rhizobium loti probable integral membrane protein Mlr0973 TR:Q98LL9 (EMBL:AP002996) (410 aa) fasta scores: E(): 1.5e-13, 28.019% id in 207 aa, and to Rhizobium meliloti conserved hypothetical membrane protein Smb20863 TR:CAC49557 (EMBL:AL603646) (343 aa) fasta scores: E(): 6.1e-13, 26.054% id in 261 aa. (311 aa) |
| | BP0876 | Putative lipoprotein; Similar to Escherichia coli hypothetical lipoprotein YdcL precursor YdcL or B1431 or Z2287 or Ecs2036 SW:YDCL_ECOLI (P76101) (222 aa) fasta scores: E(): 4.1e-13, 30.942% id in 223 aa, and to Rhizobium meliloti putative polysaccharide export system periplasmic transmembrane protein Smc01794 TR:CAC45812 (EMBL:AL591786) (191 aa) fasta scores: E(): 2.1, 28.161% id in 174 aa. (226 aa) |
| | ycgR | Conserved hypothetical protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility. (238 aa) |
| | BP0895 | Conserved hypothetical protein; Similar to Halobacterium sp 50S ribosomal protein l44E Rpl44e or Vng0551G TR:Q9HRT6 (EMBL:AE005006) (61 aa) fasta scores: E(): 8.8, 39.024% id in 41 aa. (71 aa) |
| | BP0896 | Hypothetical protein; No significant database matches. (83 aa) |
| | BP0991 | Two-component response regulator; Similar to Bradyrhizobium japonicum transcriptional regulatory protein FixJ SW:FIXJ_BRAJA (P23221) (205 aa) fasta scores: E(): 3e-26, 41.146% id in 192 aa, and to Pseudomonas sp transcriptional activator StdR TR:O50213 (EMBL:AF031161) (207 aa) fasta scores: E(): 1.2e-27, 47.644% id in 191 aa. (208 aa) |
| | BP0992 | Tw-component sensor kinase; Similar to Azorhizobium caulinodans sensor protein FixL SW:FIXL_AZOCA (P26489) (504 aa) fasta scores: E(): 1.7e-37, 47.893% id in 261 aa, and to Caulobacter crescentus sensory box histidine kinase FixL Cc0759 TR:Q9AA47 (EMBL:AE005751) (504 aa) fasta scores: E(): 2.4e-35, 45.059% id in 253 aa. (584 aa) |
| | flaA | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (391 aa) |
| | fliA | RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (245 aa) |
| | flhD | Flagellar transcriptional activator FlbB; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. (107 aa) |
| | flhC | Flagellar transcriptional activator FlhC; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family. (186 aa) |
| | motA | Similar to Escherichia coli chemotaxis MotA protein MotA or B1890 SW:MOTA_ECOLI (P09348) (295 aa) fasta scores: E(): 2.9e-60, 55.439% id in 285 aa, and to Salmonella typhimurium chemotaxis MotA protein MotA SW:MOTA_SALTY (P55891) (295 aa) fasta scores: E(): 9e-63, 56.842% id in 285 aa. (291 aa) |
| | motB | Similar to Escherichia coli chemotaxis MotB protein MotB or B1889 or Z2943 or Ecs2599 SW:MOTB_ECOLI (P09349) (308 aa) fasta scores: E(): 8.5e-54, 57.500% id in 280 aa, and to Salmonella typhimurium chemotaxis MotB protein MotB SW:MOTB_SALTY (P55892) (309 aa) fasta scores: E(): 9.8e-54, 58.156% id in 282 aa. (315 aa) |
| | cheA | Chemotaxis protein CheY (Pseudogene); HMMPfam hit to PF00072, Response regulator receiver domain. (685 aa) |
| | cheW | Similar to Escherichia coli chemotaxis protein CheW or B1887 or Z2941 or Ecs2597 SW:CHEW_ECOLI (P07365) (167 aa) fasta scores: E(): 1.3e-41, 74.83% id in 155 aa, and to Burkholderia pseudomallei (Pseudomonas pseudomallei) chemotaxis protein CheW TR:O05183 (EMBL:U92493) (175 aa) fasta scores: E(): 7e-43, 72.56% id in 164 aa. (166 aa) |
| | tsr | Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or B4355 SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 3e-64, 46.71% id in 533 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein II TaR SW:MCP2_SALTY (P02941) (553 aa) fasta scores: E(): 1.2e-63, 45.87% id in 558 aa. Also similar to BP1384 (64.476% identity in 563 aa overlap), BP1385 (61.649% identity in 558 aa overlap), BP2268 (56.415% identity in 491 aa overlap), and to BP1591 (44.216% identity in 536 aa overlap). (568 aa) |
| | cheB | Chemotaxis protein methyltransferase (Pseudogene); Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (350 aa) |
| | cheY | Similar to Escherichia coli chemotaxis protein CheY or B1882 or Z2936 or Ecs2592 TR:AAG56872 (EMBL:K02175) (129 aa) fasta scores: E(): 5.1e-36, 78.73% id in 127 aa, and to Burkholderia pseudomallei (Pseudomonas pseudomallei) CheY TR:P94342 (EMBL:U78087) (131 aa) fasta scores: E(): 1.9e-37, 80.31% id in 127 aa. (129 aa) |
| | cheZ | Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). (210 aa) |
| | BP1091 | Similar to Rhodobacter sphaeroides DmsO/TmaO-response regulator DorR TR:O30741 (EMBL:AF016236) (232 aa) fasta scores: E(): 8.7e-18, 33.76% id in 234 aa, and to Pseudomonas aeruginosa probable two-component response regulator Pa4983 TR:Q9HUI2 (EMBL:AE004911) (244 aa) fasta scores: E(): 2.2e-17, 33.33% id in 243 aa. (242 aa) |
| | BP1092 | Probable two-component histidine kinase; Similar to Escherichia coli sensor protein KdpD or B0695 SW:KDPD_ECOLI (P21865) (894 aa) fasta scores: E(): 6.1e-11, 30.9% id in 233 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1433 TR:Q9I3R4 (EMBL:AE004573) (650 aa) fasta scores: E(): 2.9e-27, 24.77% id in 654 aa. (949 aa) |
| | BP1175 | Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa0320 TR:Q9I6H1 (EMBL:AE004470) (116 aa) fasta scores: E(): 3.7e-06, 35.05% id in 97 aa, and to Escherichia coli protein YgiW precursor or B3024 or Z4376 or Ecs3906 SW:YGIW_ECOLI (P52083) (130 aa) fasta scores: E(): 3.8e-05, 36.63% id in 101 aa. (117 aa) |
| | clsB-2 | Probable phospholipase; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. (400 aa) |
| | BP1340 | Similar to Pseudomonas aeruginosa hypothetical protein Pa2156 TR:Q9I1V9 (EMBL:AE004642) (245 aa) fasta scores: E(): 2.2e-62, 63.93% id in 244 aa, and to Escherichia coli hypothetical protein YbhP or B0790 or Z1009 or Ecs0868 SW:YBHP_ECOLI (P75772) (253 aa) fasta scores: E(): 2.8e-53, 53.72% id in 255 aa. Also similar to BP0710, 37.801% identity (46.610% ungapped) in 291 aa overlap. (252 aa) |
| | flhB | Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (384 aa) |
| | flhF | Flagellar biosynthesis protein FlhF (Pseudogene); (GC)4 in pertussis; (GC)5 in parapertussis and bronchiseptica. (160 aa) |
| | flgM | Similar to Escherichia coli negative regulator of flagellin synthesis FlgM or B1071 SW:FLGM_ECOLI (P43532) (97 aa) fasta scores: E(): 0.0023, 37.36% id in 91 aa, and to Salmonella typhimurium negative regulator of flagellin synthesis FlgM or FlgR or MviS SW:FLGM_SALTY (P26477) (97 aa) fasta scores: E(): 0.00074, 36.55% id in 93 aa. (96 aa) |
| | flgA | Flagella basal body P-ring formation protein; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. (236 aa) |
| | flgB | Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (135 aa) |
| | flgC | Similar to Salmonella typhimurium flagellar basal-body rod protein FlgC or FlaW or Fla FIII SW:FLGC_SALTY (P16438) (134 aa) fasta scores: E(): 3.4e-31, 67.39% id in 138 aa, and to Yersinia enterocolitica flagellar basal-body rod protein FlgC SW:FLGC_YEREN (Q56894) (134 aa) fasta scores: E(): 4.1e-32, 72.46% id in 138 aa. (139 aa) |
| | flgD | Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein. (234 aa) |
| | flgE | Similar to Salmonella typhimurium flagellar hook protein FlgE or FlaK or Fla FV SW:FLGE_SALTY (P16322) (402 aa) fasta scores: E(): 4e-24, 40.08% id in 479 aa, and to Escherichia coli flagellar hook protein FlgE or FlaK or Fla FV or B1076 SW:FLGE_ECOLI (P75937) (401 aa) fasta scores: E(): 1.8e-25, 40.08% id in 479 aa. (473 aa) |
| | flgF | Similar to Salmonella typhimurium flagellar basal-body rod protein FlgF or FlaX or Fla FVI SW:FLGF_SALTY (P16323) (251 aa) fasta scores: E(): 3.1e-34, 48.01% id in 252 aa, and to Escherichia coli flagellar basal-body rod protein FlgF or FlaX or Fla FVI or B1077 SW:FLGF_ECOLI (P75938) (251 aa) fasta scores: E(): 6.6e-34, 48.01% id in 252 aa. (254 aa) |
| | flgG | Similar to Salmonella typhimurium flagellar basal-body rod protein FlgG or FlaL or Fla FVII SW:FLGG_SALTY (P16439) (260 aa) fasta scores: E(): 3.2e-60, 67.05% id in 261 aa, and to Escherichia coli, and flagellar basal-body rod protein FlgG or FlaL or Fla FVII or B1078 or Z1716 or Ecs1456 SW:FLGG_ECOLI (P75939) (260 aa) fasta scores: E(): 7.2e-60, 66.66% id in 261 aa. (261 aa) |
| | flgH | Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (229 aa) |
| | flgI | Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (377 aa) |
| | flgJ | Peptidoglycan hydrolase; Similar to Salmonella typhimurium peptidoglycan hydrolase FlgJ or FlaZ or Fla FX SW:FLGJ_SALTY (P15931) (316 aa) fasta scores: E(): 3.9e-22, 42.58% id in 317 aa, and to Escherichia coli peptidoglycan hydrolase FlgJ or FlaZ or Fla FX or B1081 SW:FLGJ_ECOLI (P75942) (313 aa) fasta scores: E(): 3.9e-22, 40.56% id in 318 aa. (340 aa) |
| | flgK | Similar to Salmonella typhimurium flagellar hook-associated protein 1 FlgK or FlaS or FlaW SW:FLGK_SALTY (P15932) (552 aa) fasta scores: E(): 1.2e-68, 40.32% id in 558 aa, and to Escherichia coli flagellar hook-associated protein 1 FlgK or FlaS or FlaW or B1082 SW:FLGK_ECOLI (P33235) (546 aa) fasta scores: E(): 3.5e-70, 40.1% id in 551 aa. (548 aa) |
| | flgL | Flagellar hook-associated protein 3; Similar, over the N-terminal region, to Salmonella typhimurium flagellar hook-associated protein 3 FlgL or FlaT or FlaU SW:FLGL_SALTY (P16326) (317 aa) fasta scores: E(): 1.9e-21, 42.78% id in 194 aa, and to Pseudomonas aeruginosa flagellar hook-associated protein type 3 FlgL TR:Q9AGJ3 (EMBL:AF332547) (433 aa) fasta scores: E(): 2.4e-17, 28.29% id in 509 aa. (510 aa) |
| | tsr-2 | Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or Ched or B4355 SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 1.4e-54, 46.18% id in 550 aa, and to Escherichia coli methyl-accepting chemotaxis protein II Tar or Chem or B1886 SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 1.3e-53, 45.24% id in 557 aa. (606 aa) |
| | tar | Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or B1886 SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 1.8e-64, 45.36% id in 529 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or B4355 SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 1.1e-62, 45.59% id in 522 aa. (539 aa) |
| | fliR | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (262 aa) |
| | fliQ | Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (89 aa) |
| | fliP | Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (244 aa) |
| | fliO | Flagellar protein FliO; Similar to Escherichia coli flagellar protein FliO or FlbD or FlaP or B1947 SW:FLIO_ECOLI (P22586) (121 aa) fasta scores: E(): 2.8e-06, 36.36% id in 110 aa, and to Salmonella typhimurium flagellar protein FliO or FlbD or FlaP SW:FLIO_SALTY (P54699) (124 aa) fasta scores: E(): 2.1e-07, 37.61% id in 109 aa. (113 aa) |
| | fliN | Similar to Escherichia coli flagellar motor switch protein FliN or MotD or FlaN or B1946 SW:FLIN_ECOLI (P15070) (137 aa) fasta scores: E(): 1.3e-23, 61.53% id in 130 aa, and to Salmonella typhimurium flagellar motor switch protein FliN or MotD or FlaNf SW:FLIN_SALTY (P26419) (137 aa) fasta scores: E(): 3.7e-24, 63.84% id in 130 aa. (166 aa) |
| | fliM | Similar to Escherichia coli flagellar motor switch protein FliM or Fla AII or Fla QII or CheC2 or B1945 SW:FLIM_ECOLI (P06974) (334 aa) fasta scores: E(): 3.6e-66, 52.32% id in 323 aa, and to Salmonella typhimurium flagellar motor switch protein FliM or Fla AII or Fla QII or CheC2 SW:FLIM_SALTY (P26418) (334 aa) fasta scores: E(): 1.6e-67, 52.96% id in 321 aa. (336 aa) |
| | fliL | Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (182 aa) |
| | fliJ | Flagellar protein FliJ; Similar to Escherichia coli flagellar protein FliJ or FlaO or FlaS or B1942 SW:FLIJ_ECOLI (P52613) (147 aa) fasta scores: E(): 5.2e-10, 33.1% id in 145 aa, and to Salmonella typhimurium flagellar protein FliJ or FlaO or FlaS SW:FLIJ_SALTY (P26463) (147 aa) fasta scores: E(): 6e-10, 33.79% id in 145 aa. (148 aa) |
| | fliI | Similar to Escherichia coli flagellum-specific ATP synthase FliI or Fla AIII or FlaC or B1941 SW:FLII_ECOLI (P52612) (457 aa) fasta scores: E(): 4.1e-87, 64.95% id in 468 aa, and to Salmonella typhimurium flagellum-specific ATP synthase FliI or Fla AIII or FlaC SW:FLII_SALTY (P26465) (456 aa) fasta scores: E(): 4.1e-87, 65.58% id in 462 aa. (477 aa) |
| | fliH | Similar to Escherichia coli flagellar assembly protein FliH or Fla BIII or Fla AII.3 or B1940 SW:FLIH_ECOLI (P31068) (228 aa) fasta scores: E(): 4.8e-14, 29.77% id in 225 aa, and to Salmonella typhimurium flagellar assembly protein FliH or Fla BIII or Fla AII.3 SW:FLIH_SALTY (P15934) (235 aa) fasta scores: E(): 7.2e-15, 31.85% id in 226 aa. (251 aa) |
| | fliG | Similar to Escherichia coli flagellar motor switch protein FliG or Fla BII or Fla AII.2 or b1939 or z3029 or ecs2678 SW:FLIG_ECOLI (P31067) (331 aa) fasta scores: E(): 1.7e-70, 61.39% id in 329 aa, and to Salmonella typhimurium flagellar motor switch protein FliG or Fla BII or Fla AII.2 SW:FLIG_SALTY (P15933) (331 aa) fasta scores: E(): 6.3e-70, 60.48% id in 329 aa. (336 aa) |
| | fliF | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (558 aa) |
| | fliE | Similar to Escherichia coli flagellar hook-basal body complex protein FliE or FlaN or Fla AI or B1937 or Z3027 or Ecs2676 SW:FLIE_ECOLI (P25797) (103 aa) fasta scores: E(): 3e-12, 47.22% id in 108 aa, and to Salmonella typhimurium flagellar hook-basal body complex protein FliE or FlaN or Fla AI SW:FLIE_SALTY (P26462) (103 aa) fasta scores: E(): 1.9e-11, 45.79% id in 107 aa. (110 aa) |
| | BP1405 | Hypothetical protein; No significant database matches. (131 aa) |
| | BP1406 | Putative flagellar protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa1473 TR:Q9I3N9 (EMBL:AE004576) (111 aa) fasta scores: E(): 2e-07, 43.18% id in 88 aa, and to Bacillus subtilis YlqH protein TR:O34867 (EMBL:AJ000975) (93 aa) fasta scores: E(): 2.7e-07, 42.68% id in 82 aa. (108 aa) |
| | fliT | Hypothetical protein (Pseudogene); (CCAA)2 in pertussis; (CCAA)1 in parapertussis. (116 aa) |
| | fliS | Flagellar protein FliS; Similar to Salmonella typhimurium flagellar protein FliS SW:FLIS_SALTY (P26609) (135 aa) fasta scores: E(): 4.5e-19, 47.86% id in 117 aa, and to Escherichia coli flagellar protein FliS or B1925 SW:FLIS_ECOLI (P26608) (136 aa) fasta scores: E(): 1.8e-11, 33.33% id in 123 aa. (142 aa) |
| | fliD | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (457 aa) |
| | flaG | Putative flagellar protein; Similar to Pseudomonas aeruginosa FlaG TR:O33420 (EMBL:L81176) (128 aa) fasta scores: E(): 0.033, 31.35% id in 118 aa, and to Riftia pachyptila endosymbiont FlaG TR:Q9ZFD5 (EMBL:AF105060) (115 aa) fasta scores: E(): 0.049, 28.42% id in 95 aa. (125 aa) |
| | BP1413 | Similar to Pseudomonas aeruginosa hypothetical protein Pa5052 TR:Q9HUC7 (EMBL:AE004918) (231 aa) fasta scores: E(): 0.00036, 35.71% id in 168 aa. (232 aa) |
| | cvpA | Similar to Escherichia coli colicin V production protein CvpA or DedE or B2313 SW:CVPA_ECOLI (P08550) (162 aa) fasta scores: E(): 1.5e-10, 32.7% id in 159 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3109 TR:Q9HZB0 (EMBL:AE004735) (180 aa) fasta scores: E(): 1.1e-13, 36.25% id in 160 aa. (162 aa) |
| | BP1441 | Probable membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein Smc01464 TR:CAC46726 (EMBL:AL591789) (426 aa) fasta scores: E(): 4.8e-25, 33.42% id in 377 aa, and to Rhizobium loti Mll4270 protein TR:Q98EF3 (EMBL:AP003003) (403 aa) fasta scores: E(): 1.3e-19, 29.72% id in 397 aa. (385 aa) |
| | BP1492 | Hypothetical protein; Similar to the C-terminal regions of Salmonella typhimurium AdrA protein AdrA TR:Q9L401 (EMBL:AJ271071) (370 aa) fasta scores: E(): 8.8e-15, 34.71% id in 193 aa, and to Escherichia coli hypothetical protein YaiC or B0385 SW:YAIC_ECOLI (P21830) (371 aa) fasta scores: E(): 1e-14, 34.57% id in 188 aa. (365 aa) |
| | BP1520 | Similar to Caulobacter crescentus hypothetical protein Cc3092 TR:Q9A3V9 (EMBL:AE005972) (134 aa) fasta scores: E(): 4.2e-22, 46.97% id in 132 aa, and to Rhizobium loti Mlr0112 protein TR:Q98NJ4 (EMBL:AP002994) (132 aa) fasta scores: E(): 1.4e-12, 34.09% id in 132 aa. (148 aa) |
| | BP1522 | Conserved hypothetical protein; Similar to Alcaligenes eutrophus hypothetical 10.9 kDa protein TR:Q9ZAL5 (EMBL:Y10831) (98 aa) fasta scores: E(): 1.1e-16, 71.93% id in 57 aa, and to Xylella fastidiosa hypothetical protein Xf2490 TR:Q9PAL4 (EMBL:AE004057) (100 aa) fasta scores: E(): 6.4e-12, 67.24% id in 58 aa. (57 aa) |
| | BP1523 | Putative DNA-binding protein; Similar to Alcaligenes eutrophus hypothetical 14.2 kDa protein TR:Q9ZAL4 (EMBL:Y10831) (133 aa) fasta scores: E(): 3.3e-41, 77.27% id in 132 aa, and to Xylella fastidiosa hypothetical protein Xf2491 TR:Q9PAL3 (EMBL:AE004057) (133 aa) fasta scores: E(): 1.9e-34, 65.15% id in 132 aa. (133 aa) |
| | BP1524 | Putative membrane protein; No significant database matches. (78 aa) |
| | BP1525 | Putative membrane protein; Similar to Agrobacterium tumefaciens Agr_l_2587p TR:AAK89860 (EMBL:AE008329) (171 aa) fasta scores: E(): 0.96, 29.03% id in 155 aa. (159 aa) |
| | BP1528 | Conserved hypothetical protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (350 aa) |
| | BP1591 | Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or B4355 SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 2.2e-49, 39.74% id in 556 aa, and to Salmonella typhimurium LT2 methyl-accepting chemotaxis protein I, serine sensor receptor Tsr TR:AAL23351 (EMBL:AE008913) (553 aa) fasta scores: E(): 4.5e-50, 40.9% id in 533 aa. (563 aa) |
| | BP1592 | Similar to Pseudomonas aeruginosa hypothetical protein Pa3258 TR:Q9HYY2 (EMBL:AE004748) (601 aa) fasta scores: E(): 1.4e-72, 37.3% id in 571 aa, and to Agrobacterium tumefaciens Agr_c_1510p TR:AAK86632 (EMBL:AE008015) (603 aa) fasta scores: E(): 3e-46, 30.32% id in 587 aa. (600 aa) |
| | BP1658 | Probable two-component sensor histidine kinase; The C-terminal region of this CDS is Similar to Deinococcus radiodurans sensor histidine kinase Dr0577 TR:Q9RWT8 (EMBL:AE001916) (590 aa) fasta scores: E(): 1.4e-05, 31.27% id in 227 aa, and to Pseudomonas aeruginosa probable two-component sensor pa1979 TR:Q9I2C8 (EMBL:AE004624) (216 aa) fasta scores: E(): 1.6e-06, 32.38% id in 176 aa. (597 aa) |
| | BP1659 | Similar to Streptomyces reticuli response regulatory protein SenR TR:Q9RIM0 (EMBL:Y14336) (217 aa) fasta scores: E(): 1.8e-15, 34.52% id in 223 aa, and to Streptomyces coelicolor AbsA2 or Sce8.19 TR:Q53894 (EMBL:U51332) (222 aa) fasta scores: E(): 3.9e-16, 30.88% id in 204 aa. (224 aa) |
| | sphB2 | Autotransporter; Sequence contains 6 Ns. to be corrected. (1011 aa) |
| | BP1726 | MerR-family transcriptional regulator; Similar to Rhizobium meliloti heavy metal dependent transcription regulator HmrR SW:HMRR_RHIME (Q9X5X4) (147 aa) fasta scores: E(): 1.2e-35, 71.53% id in 130 aa, and to Agrobacterium tumefaciens strC58 Agr_c_1709p TR:AAK86743 (EMBL:AE008024) (140 aa) fasta scores: E(): 3.7e-29, 60.3% id in 131 aa. Also similar to BP3173, 58.333% identity in 84 aa overlap. (132 aa) |
| | BP1727 | Putative exported protein; Similar to Pseudomonas syringae OrfH protein TR:Q9KWM7 (EMBL:AB033420) (65 aa) fasta scores: E(): 2.9e-05, 43.54% id in 62 aa, and to Agrobacterium tumefaciens strC58 Agr_c_2220p TR:AAK87005 (EMBL:AE008049) (84 aa) fasta scores: E(): 2.5e-07, 47.61% id in 63 aa. (66 aa) |
| | bvgR | Regulatory protein BvgR; Previously sequenced as Bordetella pertussis BvgR TR:O85677 (EMBL:AF071567) (291 aa) fasta scores: E(): 5.1e-121, 100% id in 291 aa. (291 aa) |
| | bvgS | Virulence sensor protein; Member of the two-component regulatory system BvgS/BvgA. Phosphorylates BvgA via a four-step phosphorelay in response to environmental signals. (1238 aa) |
| | bvgA | Virulence factors transcription regulator; Member of the two-component regulatory system BvgS/BvgA. Activates the transcription of virulence genes. (209 aa) |
| | BP1898 | Transposase (Pseudogene); Inverted repeat for IS481 element. (277 aa) |
| | BP1989 | Putative membrane protein (Pseudogene); (GC)4 in pertussis; (GC)2 in parapertussis and bronchiseptica. (570 aa) |
| | BP1990 | Putative membrane protein; N-terminus is similar to the N-terminal region of similar to Pseudomonas aeruginosa hypothetical protein PaA1727 TR:Q9I310 (EMBL:AE004599) (685 aa) fasta scores: E(): 1.5e-17, 38.62% id in 189 aa. Similar to N-terminal region of Pseudomonas carboxydovorans hypothetical protein CoxC TR:Q9KX27 (EMBL:X82447) (402 aa) fasta scores: E(): 6.7e-16, 33.33% id in 264 aa. (272 aa) |
| | BP1991 | Putative membrane protein; Similar to Caulobacter crescentus pilus subunit protein CC2948 TR:Q9L720 (EMBL:AF229646) (59 aa) fasta scores: E(): 4.6e-05, 54% id in 50 aa, and to Rhizobium meliloti probable pSymA plasmid PilA2 pilus assembly protein TR:AAK65511 (EMBL:AE007272) (56 aa) fasta scores: E(): 0.00024, 50% id in 54 aa. (58 aa) |
| | BP1992 | Putative membrane protein; Similar to Bacillus halodurans late competence protein required for processing and translocation BH3035 TR:Q9K8H1 (EMBL:AP001517) (162 aa) fasta scores: E(): 0.0035, 26.41% id in 159 aa, and to the C-terminal region of Aeromonas hydrophila type 4 prepilin-like proteins leader peptide processing enzyme [includes: leader peptidase; N-methyltransferase] TapD SW:LEP4_AERHY (P45794) (290 aa) fasta scores: E(): 0.45, 27.84% id in 176 aa. (174 aa) |
| | BP1993 | Putative exported protein; Poor database matches. Similar to the C-terminal region of Pseudomonas aeruginosa hypothetical protein PA4294 TR:Q9HWA6 (EMBL:AE004845) (168 aa) fasta scores: E(): 0.0027, 32.16% id in 143 aa. (147 aa) |
| | BP1994 | Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein PA5409 TR:Q9HTF5 (EMBL:AE004953) (186 aa) fasta scores: E(): 2.5, 29.8% id in 151 aa. N-terminus is similar to N-terminal region of Rhizobium meliloti hypothetical protein SMA1572 TR:AAK65512 (EMBL:AE007272) (141 aa) fasta scores: E(): 0.029, 38.82% id in 85 aa. (158 aa) |
| | BP1995 | Putative membrane protein; N-terminus is similar to the N-terminal region of Pseudomonas aeruginosa hypothetical protein PA4305 TR:Q9HW95 (EMBL:AE004846) (303 aa) fasta scores: E(): 3.9e-14, 36.36% id in 242 aa, and Rhizobium meliloti putative pilus assembly signal peptide protein TR:CAC41527 (EMBL:AL591782) (269 aa) fasta scores: E(): 0.0098, 33.2% id in 250 aa. (313 aa) |
| | BP1996 | Similar to Pseudomonas aeruginosa probable type II secretion system protein PA4304 TR:Q9HW96 (EMBL:AE004846) (416 aa) fasta scores: E(): 1e-32, 39.73% id in 453 aa. C-terminus is similar to the C-terminal region of Aeromonas salmonicida general secretion pathway protein D precursor ExeD SW:GSPD_AERSA (P45778) (678 aa) fasta scores: E(): 6.1e-12, 26.47% id in 374 aa; Belongs to the bacterial secretin family. (449 aa) |
| | BP1997 | Conserved hypothetical protein; Similar to Ralstonia solanacearum probable pilus assembly protein Cpae2 or Rsp1086 or Rs02593 SWALL:Q8XQY2 (EMBL:AL646082) (439 aa) fasta scores: E(): 9.8e-23, 34.31% id in 440 aa. (449 aa) |
| | BP1999 | Bacterial type II secretion system protein (pseudogene); CCC in pertussis; C(AT)CC in parapertussis and bronchiseptica. (306 aa) |
| | BP2001 | Putative membrane protein (Pseudogene); 3 probable transmembrane helices predicted for BP2000 by TMHMM2.0 at aa 81-100, 110-132 and 263-285. (280 aa) |
| | BP2003 | Putative exported protein (pseudogene); Tentative CDS prediction; unknown function. (747 aa) |
| | BP2004 | Putative response regulator; Similar, except at N-terminus, to Pseudomonas aeruginosa type 4 fimbriae expression regulatory protein PilR, pilR or PA4547 SW:PILR_PSEAE (Q00934) (445 aa) fasta scores: E(): 2e-35, 40.123% id in 324 aa. Similar to many other bacterial response regulators. (463 aa) |
| | BP2005 | Putative lipoprotein; Unknown function. (231 aa) |
| | BP2006 | Similar to Rhizobium loti hypothetical protein MLL3449 TR:Q98G81 (EMBL:AP003002) (99 aa) fasta scores: E(): 4.7e-06, 42.268% id in 97 aa, Caulobacter crescentus hypothetical protein CC0827 TR:Q9A9Y4 (EMBL:AE005759) (145 aa) fasta scores: E(): 1.2e-05, 41.549% id in 142 aa and to Agrobacterium tumefaciens hypothetical protein AGR_l_2637 TR:AAK89886 (EMBL:AE008331) (142 aa) fasta scores: E(): 4.5e-05, 42.466% id in 146 aa. (155 aa) |
| | BP2007 | Similar to Pseudomonas aeruginosa RNA polymerase sigma-H factor AlgU or AlgT or PA0762 SW:RPSH_PSEAE (Q06198) (193 aa) fasta scores: E(): 2.4e-14, 34.783% id in 184 aa and to others e.g. Rhizobium meliloti putative RNA polymerase sigma factor protein TR:CAC49904 (EMBL:AL603647) (227 aa) fasta scores: E(): 4.8e-28, 43.836% id in 219 aa; Belongs to the sigma-70 factor family. ECF subfamily. (234 aa) |
| | BP2008 | Putative exported protein; Contains a region with similarity to bacterial hypothetical proteins e.g. Deinococcus radiodurans hypothetical protein DRA0258 TR:Q9RYQ1 (EMBL:AE001863) (288 aa) fasta scores: E(): 0.0007, 30.726% id in 179 aa. (189 aa) |
| | BP2067 | Putative superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (170 aa) |
| | BP2206 | Putative two-component response regulator (pseudogene); 20 bp deletion in pertussis, relative to parapertussis and bronchiseptica, following this codon. (449 aa) |
| | BP2268 | Similar to Escherichia coli methyl-accepting chemotaxis protein ii tar or chem or b1886 SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 2.1e-60, 46.69% id in 484 aa. (513 aa) |
| | BP2455 | Putative membrane efflux protein; Similar to Escherichia coli glutathione-regulated potassium-efflux system protein KefB or TrkB or b3350 SW:KEFB_ECOLI (P45522) (601 aa) fasta scores: E(): 2.2e-55, 45.78% id in 380 aa and to Vibrio cholerae glutathione-regulated potassium-efflux system protein KefB vc2606 TR:Q9KNX4 (EMBL:AE004327) (656 aa) fasta scores: E(): 2.8e-53, 46.25% id in 387 aa. (408 aa) |
| | BP2465 | Hypothetical protein; Database similarities to the predicted product o fthis CDS covers a region defined by the PFAM motif PF00990, GGDEF domain, the function of which is unknown. Similar in parts to several regulators including: Rhizobium meliloti putative response regulator sma2301 TR:AAK65897 (EMBL:AE007308) (448 aa) fasta scores: E(): 1e-16, 42.16% id in 185 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1107 pa1107 TR:Q9I4M8 (EMBL:AE004541) (398 aa) fasta scores: E(): 1.1e-16, 38.91% id in 185 aa. (240 aa) |
| | kdpA | Potassium-transporting ATPase A chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane. (594 aa) |
| | kdpB | Potassium-transporting ATPase B chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. (721 aa) |
| | kdpC | Potassium-transporting ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex. (199 aa) |
| | kdpD | Similar to Escherichia coli sensor protein KdpD or b0695 SW:KDPD_ECOLI (P21865) (894 aa) fasta scores: E(): 1.2e-68, 46.35% id in 863 aa and to Burkholderia solanacearum probable two-component sensor kinase KdpD transcription regulator protein TR:CAD16882 (EMBL:AL646075) (937 aa) fasta scores: E(): 1.6e-84, 58.87% id in 885 aa. (904 aa) |
| | kdpE | Similar to Escherichia coli Kdp operon (involved in potassium transport) transcriptional regulatory protein KdpE or b0694 SW:KDPE_ECOLI (P21866) (225 aa) fasta scores: E(): 2.9e-54, 63.8% id in 221 aa and to Escherichia coli O157:H7 EDL933 regulator of Kdp operon KdpE TR:AAG55015 (EMBL:AE005247) (225 aa) fasta scores: E(): 4.5e-54, 63.34% id in 221 aa. (231 aa) |
| | BP2547 | Similar to many regulatory proteins including: Salmonella typhimurium transcriptional regulatory protein TctD SW:TCTD_SALTY (P22104) (224 aa) fasta scores: E(): 1.8e-36, 50.000% id in 220 aa and Pseudomonas aeruginosa probable two-component response regulator Pa0756 TR:Q9I5H3 (EMBL:AE004510) (223 aa) fasta scores: E(): 2.1e-40, 53.812% id in 223 aa. (229 aa) |
| | BP2548 | Similar to several two-component system, histidine kinases e.g. Rhizobium loti Mll7952 TR:Q984L4 (EMBL:AP003013) (452 aa) fasta scores: E(): 1.3e-44, 37.360% id in 447 aa and Salmonella typhi TctE TR:O68289 (EMBL:AF029846) (439 aa) fasta scores: E(): 1.2e-29, 32.576% id in 396 aa. (452 aa) |
| | BP2722 | Similar to Pseudomonas putida Cadmium-Transporting ATPase CadA TR:AAK48831 (EMBL:AF333961) (737 aa) fasta scores: E(): 6.3e-147, 62% id in 737 aa and to Pseudomonas aeruginosa probable metal-transporting P-type ATPase pa3690 TR:Q9HXV0 (EMBL:AE004788) (740 aa) fasta scores: E(): 5.2e-141, 60.85% id in 746 aa. (778 aa) |
| | BP2723 | Similar to Pseudomonas putida MerR-family response regulator CadR TR:AAK48830 (EMBL:AF333961) (147 aa) fasta scores: E(): 8e-24, 51.72% id in 145 aa, and to Haemophilus influenzae Zn ZntR or Hi1623 SW:ZNTR_HAEIN (P45277) (135 aa) fasta scores: E(): 4.6e-17, 46.61% id in 118 aa. (144 aa) |
| | BP2860 | Probable cation-transporting ATPase; Highly similar to Rhizobium meliloti copper-transporting ATPase ActP SW:ATCU_RHIME (Q9X5X3) (827 aa) fasta scores: E(): 1.5e-179, 66.58% id in 802 aa, and to Synechococcus sp cation-transporting ATPase PacS SW:ATCS_SYNP7 (P37279) (747 aa) fasta scores: E(): 2.3e-110, 49.33% id in 748 aa. Note the differing predicted N-termini of these proteins. The Bordetella protein is predicted to be ~18 aa shorter than the other two examples. The upstream IS481 element may offer one explanation for this. It is also not clear if the insertion of this IS element af [...] (808 aa) |
| | BP3137 | Putative two-component system sensor protein; Similar to Pseudomonas aeruginosa probable two-component sensor PA4380 TR:Q9HW22 (EMBL:AE004854) (426 aa) fasta scores: E(): 2.4e-23, 29.38% id in 439 aa. (440 aa) |
| | BP3138 | Similar to Pseudomonas aeruginosa probable two-component response regulator PA4381 TR:Q9HW21 (EMBL:AE004854) (227 aa) fasta scores: E(): 8.3e-34, 47.57% id in 227 aa. (236 aa) |
| | BP3139 | Putative oxidoreductase; Similar to Agrobacterium tumefaciens Agr_C_1314p TR:AAK86533 (EMBL:AE008006) (478 aa) fasta scores: E(): 3.2e-83, 49.46% id in 463 aa. (471 aa) |
| | hmrR | Similar to the N-terminal region of Rhizobium meliloti heavy metal dependent transcription regulator HmrR SW:HMRR_RHIME (Q9X5X4) (147 aa) fasta scores: E(): 2e-15, 61.9% id in 84 aa, and to Escherichia coli transcriptional regulator CueR or B0487 SW:CUER_ECOLI (P77565) (135 aa) fasta scores: E(): 9.5e-08, 37.5% id in 88 aa. Also similar to BP1726, 58.333% identity in 84 aa overlap. (90 aa) |
| | BP3214 | Similar to Escherichia coli membrane-bound lytic murein transglycosylase D precursor MltD or DniR or B0211 SW:MLTD_ECOLI (P23931) (452 aa) fasta scores: E(): 2.4e-29, 32.05% id in 443 aa, and to Pseudomonas aeruginosa membrane-bound lytic murein transglycosylase d precursor MltD or Pa1812 TR:Q9I2T2 (EMBL:AE004607) (534 aa) fasta scores: E(): 1.1e-47, 38.84% id in 484 aa; putative membrane-bound precursor protein. (469 aa) |
| | ompR | Hypothetical protein (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. No significant database matches. (233 aa) |
| | BP3223 | Similar to Pseudomonas aeruginosa two-component sensor EnvZ or PA5199 TR:Q9HTZ0 (EMBL:AE004932) (439 aa) fasta scores: E(): 5.9e-24, 31.87% id in 480 aa, and to Bordetella pertussis, Bordetella bronchiseptica, Bordetella avium, and Bordetella parapertussis RisS protein TR:O88100 (EMBL:AJ224799) (474 aa) fasta scores: E(): 4.6e-22, 34.2% id in 307 aa. (474 aa) |
| | BP3350 | Two component response regulator; Similar to Salmonella typhimurium transcriptional regulatory protein TctD TR:AAL21670 (EMBL:M28368) (224 aa) fasta scores: E(): 1.1e-37, 50.68% id in 219 aa, and to Ralstonia solanacearum putative response regulator transcription regulator protein RSC2935 TR:CAD16642 (EMBL:AL646072) (235 aa) fasta scores: E(): 2.8e-55, 66.36% id in 223 aa. (228 aa) |
| | BP3507 | Conserved hypothetical protein; Limited database matches to the full length CDS. Similar to Escherichia coli hypothetical protein YhcK TR:P77793 (EMBL:AE000246) (460 aa) fasta scores: E(): 1.2e-52, 34.74% id in 449 aa. N-terminus is similar to the N-terminal region of Rhizobium loti response regulator protein mll0859 TR:Q98LV6 (EMBL:AP002995) (408 aa) fasta scores: E(): 5.9e-20, 48.48% id in 165 aa. (475 aa) |
| | BP3508 | Hypothetical protein; Similar to Bacillus halodurans hypothetical protein BH3794 TR:Q9K6D5 (EMBL:AP001520) (231 aa) fasta scores: E(): 2.9e-13, 31.76% id in 170 aa, and to the C-terminal region of Thermotoga maritima conserved hypothetical protein TM1699 TR:Q9X225 (EMBL:AE001810) (558 aa) fasta scores: E(): 3.3e-23, 42.1% id in 171 aa. Possible gene remnant resulting from the insertion of the upstream IS element and subsequent recombination events. (201 aa) |
| | BP3511 | Hypothetical protein; No significan database matches. (88 aa) |
| | basR | Two-component regulatory system family, response regulator protein. Similar to Salmonella typhimurium transcriptional regulatory protein TctD SW:TCTD_SALTY (P22104) (224 aa) fasta scores: E(): 1.3e-29, 43.37% id in 219 aa. Previously sequenced as Bordetella pertussis transcriptional putative regulatory protein BasR TR:Q9S3M3 (EMBL:AJ132741) (223 aa) fasta scores: E(): 3.4e-81, 100% id in 223 aa. Similar to BP2547, 53.881% identity (53.881% ungapped) in 219 aa overlap. (223 aa) |
| | BP3535 | Sensor kinase protein; Two-component regulatory system family, sensor kinase protein. No significant database matches to the full length CDS. C-terminus is similar to the C-terminal regions of Escherichia coli sensor protein BasS SW:BASS_ECOLI (P30844) (363 aa) fasta scores: E(): 5.4e-19, 32.29% id in 288 aa, and Rhizobium loti two-component system, sensor protein MLL7952 TR:Q984L4 (EMBL:AP003013) (452 aa) fasta scores: E(): 3.9e-28, 38.83% id in 291 aa. (372 aa) |
| | kup | Putative potassium uptake protein; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family. (636 aa) |
| | risA | Sensor kinase protein (pseudogene); (C)3 in pertussis; (C)2 in parapertussis and bronchiseptica. (244 aa) |
| | BP3746 | Putative sodium/hydrogen exchanger family; N-terminus is similar to the N-terminal region of Oncorhynchus mykiss sodium-hydrogen exchange protein-beta SW:NAHB_ONCMY (Q01345) (759 aa) fasta scores: E(): 2.6e-22, 25.95% id in 447 aa, and to the full length Synechocystis sp. eukaryotic Na+/H+ exchanger SLR1727 TR:P73863 (EMBL:D90910) (527 aa) fasta scores: E(): 9e-32, 29.15% id in 511 aa. C-terminal region conatains a cyclic nucleotide-binding domain. (847 aa) |
| | cheD | Conserved hypothetical protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. (215 aa) |
| | BP3865 | Two-component regulatory system family, response regulator protein. Similar to Salmonella typhimurium transcriptional regulatory protein TctD SW:TCTD_SALTY (P22104) (224 aa) fasta scores: E(): 2.4e-35, 48.18% id in 220 aa, and to Rhizobium loti two-component response regulator MLL7953 TR:Q984L3 (EMBL:AP003013) (223 aa) fasta scores: E(): 2.4e-34, 47.96% id in 221 aa. Similar to BP3350, 53.302% identity (53.555% ungapped) in 212 aa overlap, and to BP2547, 50.455% identity (50.685% ungapped) in 220 aa overlap. (226 aa) |
| | BP3866 | Two-component regulatory system family, sensor kinase protein. Similar to Burkholderia solanacearum putative transmembrane sensor kinase transcription regulator protein RSC2936 TR:CAD16643 (EMBL:AL646072) (500 aa) fasta scores: E(): 2e-59, 45.27% id in 466 aa, and to Pseudomonas aeruginosa probable two-component sensor PA0757 TR:Q9I5H2 (EMBL:AE004510) (460 aa) fasta scores: E(): 2.8e-41, 36.2% id in 453 aa. (487 aa) |
