STRINGSTRING
folE2 folE2 BP3077 BP3077 BP3078 BP3078 BP3079 BP3079 BP3080 BP3080 BP3081 BP3081 BP3082 BP3082 BP3083 BP3083 BP3084 BP3084 dksA dksA relA relA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
folE2Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate. (265 aa)
BP3077Similar to Neisseria meningitidis putative outer-membrane receptor protein NMA1161 TR:Q9JUS2 (EMBL:AL162755) (764 aa) fasta scores: E(): 2e-34, 35.94% id in 740 aa. (713 aa)
BP3078Putative membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein SMC02986 TR:CAC47457 (EMBL:AL591792) (344 aa) fasta scores: E(): 2.4e-23, 44.54% id in 330 aa; Belongs to the NiCoT transporter (TC 2.A.52) family. (312 aa)
BP3079Similar to Rhizobium meliloti conserved hypothetical protein SMC02985 TR:CAC47456 (EMBL:AL591792) (214 aa) fasta scores: E(): 2.1e-09, 27.91% id in 197 aa. (193 aa)
BP3080Similar to Rhizobium loti ABC transporter, periplasmic binding protein MLL8313 TR:Q983I7 (EMBL:AP003013) (313 aa) fasta scores: E(): 8.5e-44, 44.72% id in 313 aa, and to Neisseria meningitidis adhesin, putative NMB0586 TR:Q9K0K8 (EMBL:AE002414) (304 aa) fasta scores: E(): 2.5e-41, 42.12% id in 311 aa; Belongs to the bacterial solute-binding protein 9 family. (311 aa)
BP3081Similar to Rhizobium loti ABC transporter, permease protein MLL8314 TR:Q983I6 (EMBL:AP003013) (291 aa) fasta scores: E(): 6.8e-52, 59.85% id in 269 aa, and to Neisseria meningitidis membrane protein NMB0587 TR:Q9K0K7 (EMBL:AE002415) (291 aa) fasta scores: E(): 5.7e-51, 55.05% id in 287 aa. (298 aa)
BP3082Similar to Rhizobium loti ABC transporter, ATP-binding protein MLL8315 TR:Q983I5 (EMBL:AP003013) (272 aa) fasta scores: E(): 3.5e-36, 51.73% id in 230 aa, and to Neisseria meningitidis ABC transporter, ATP-binding protein NMB0588 TR:Q9K0K6 (EMBL:AE002415) (251 aa) fasta scores: E(): 2.5e-29, 47.11% id in 225 aa. (240 aa)
BP3083Putative regulatory protein; Similar to Pseudomonas aeruginosa transcriptional regulator NP20 or PA5499 TR:Q9HT74 (EMBL:AE004962) (167 aa) fasta scores: E(): 6.6e-17, 37.34% id in 158 aa, and to Escherichia coli zinc uptake regulation protein Zur SW:ZUR_ECOLI (EMBL:U00006) (171 aa) fasta scores: E(): 8.2e-16, 37.41% id in 155 aa; Belongs to the Fur family. (170 aa)
BP3084Similar to Caulobacter crescentus hypothetical protein CC0321 TR:Q9ABB0 (EMBL:AE005705) (365 aa) fasta scores: E(): 9.5e-60, 47.79% id in 362 aa. (371 aa)
dksAPutative dnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. (154 aa)
relAPutative GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (737 aa)
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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