STRINGSTRING
BP3078 BP3078 BP3079 BP3079 BP3080 BP3080 BP3081 BP3081 BP3082 BP3082
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BP3078Putative membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein SMC02986 TR:CAC47457 (EMBL:AL591792) (344 aa) fasta scores: E(): 2.4e-23, 44.54% id in 330 aa; Belongs to the NiCoT transporter (TC 2.A.52) family. (312 aa)
BP3079Similar to Rhizobium meliloti conserved hypothetical protein SMC02985 TR:CAC47456 (EMBL:AL591792) (214 aa) fasta scores: E(): 2.1e-09, 27.91% id in 197 aa. (193 aa)
BP3080Similar to Rhizobium loti ABC transporter, periplasmic binding protein MLL8313 TR:Q983I7 (EMBL:AP003013) (313 aa) fasta scores: E(): 8.5e-44, 44.72% id in 313 aa, and to Neisseria meningitidis adhesin, putative NMB0586 TR:Q9K0K8 (EMBL:AE002414) (304 aa) fasta scores: E(): 2.5e-41, 42.12% id in 311 aa; Belongs to the bacterial solute-binding protein 9 family. (311 aa)
BP3081Similar to Rhizobium loti ABC transporter, permease protein MLL8314 TR:Q983I6 (EMBL:AP003013) (291 aa) fasta scores: E(): 6.8e-52, 59.85% id in 269 aa, and to Neisseria meningitidis membrane protein NMB0587 TR:Q9K0K7 (EMBL:AE002415) (291 aa) fasta scores: E(): 5.7e-51, 55.05% id in 287 aa. (298 aa)
BP3082Similar to Rhizobium loti ABC transporter, ATP-binding protein MLL8315 TR:Q983I5 (EMBL:AP003013) (272 aa) fasta scores: E(): 3.5e-36, 51.73% id in 230 aa, and to Neisseria meningitidis ABC transporter, ATP-binding protein NMB0588 TR:Q9K0K6 (EMBL:AE002415) (251 aa) fasta scores: E(): 2.5e-29, 47.11% id in 225 aa. (240 aa)
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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