STRINGSTRING
BP0025 BP0025 BP0026 BP0026 BP0027 BP0027 fabG-5 fabG-5 BP2555 BP2555 BP2556 BP2556 BP2557 BP2557 BP2558 BP2558 BP2559 BP2559 BP2943 BP2943 BP2944 BP2944 BP3199 BP3199
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BP0025Putative racemase (Pseudogene); Pseudogene. This CDS is disrupted by the insertion of IS481 element. Similar to Rhodococcus spAD45 putative racemase IsoG TR:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: E(): 3.3e-16, 45.370% id in 108 aa, and to Thermoplasma volcanium L-carnitine dehydratase TVG1215416 TR:BAB60328 (EMBL:AP000995) (399 aa) fasta scores: E(): 1.7e-14, 41.509% id in 106 aa. Similar to N-terminal regions of several CDSs including BP0416, BP3709, BP0253, BP3318, BP0199. (144 aa)
BP0026Putative thiolase; Similar to Mycobacterium tuberculosis CDC1551 nonspecific lipid-transfer protein mt1663 TR:AAK45933 (EMBL:AE007030) (402 aa) fasta scores: E(): 5.1e-14, 27.229% id in 415 aa, and to Pseudomonas fluorescens PhlC TR:Q51727 (EMBL:U41818) (398 aa) fasta scores: E(): 5.2e-15, 27.188% id in 320 aa. (408 aa)
BP0027MaoC family protein; Similar to Archaeoglobus fulgidus MaoC protein af2313 TR:O27971 (EMBL:AE000944) (151 aa) fasta scores: E(): 3.3e-19, 46.154% id in 143 aa, and to Rhodococcus spNCIMB 9784. fad-binding protein CampD TR:AAK50623 (EMBL:AF323755) (167 aa) fasta scores: E(): 2.4e-12, 33.562% id in 146 aa. (165 aa)
fabG-5Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 3.5e-29, 41.597% id in 238 aa. (248 aa)
BP2555Conserved hypothetical protein; Similarover the whole range to proteins of unproven function e.g. Archaeoglobus fulgidus MaoC protein af2313 TR:O27971 (EMBL:AE000944) (151 aa) fasta scores: E(): 1.3e-13, 40.000% id in 130 aa. Similar to the the very C-terminus of Escherichia coli phenylacetic acid degradation protein MaoC SW:MAOC_ECOLI (P77455) (681 aa) fasta scores: E(): 1.6e-08, 35.821% id in 134 aa. (147 aa)
BP2556Weakly similar to many proteins of undefined function e.g. Thermoplasma acidophilum hypothetical protein Ta1457 ta1457 TR:Q9HI85 (EMBL:AL445067) (135 aa) fasta scores: E(): 0.018, 25.210% id in 119 aa. (130 aa)
BP2557Conserved hypothetical protein; Similar to many e.g. Pseudomonas aeruginosa hypothetical protein Pa1016 TR:Q9I4V7 (EMBL:AE004534) (383 aa) fasta scores: E(): 2.6e-46, 43.669% id in 387 aa. (387 aa)
BP2558LysR-family transcriptional regulator; Similar to many e.g. Escherichia coli, and glycine cleavage system transcriptional activator GcvA or B2808 or Z4125 or Ecs3668 SW:GCVA_ECOLI (P32064) (305 aa) fasta scores: E(): 1.3e-22, 30.208% id in 288 aa; Belongs to the LysR transcriptional regulatory family. (295 aa)
BP2559Hypothetical protein; Similar to many e.g. Escherichia coli hypothetical protein YfdE or B2371 SW:YFDE_ECOLI (P76518) (381 aa) fasta scores: E(): 5.3e-53, 37.333% id in 375 aa; Belongs to the CoA-transferase III family. (395 aa)
BP2943Putative exported protein; Similar to several proteins of undefined function e.g. Comamonas testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 8.5e-43, 42.02% id in 326 aa and to Rhizobium meliloti hypothetical protein Sma1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 5e-40, 38.58% id in 324 aa. (329 aa)
BP2944Weakly similar to Sulfolobus tokodaii hypothetical protein St0068 TR:BAB65025 (EMBL:AP000981) (165 aa) fasta scores: E(): 4.8e-09, 30.87% id in 149 aa and to Rhodococcus sp NCIMB 9784 FAD-binding protein CampD TR:AAK50623 (EMBL:AF323755) (167 aa) fasta scores: E(): 1.2e-07, 32.41% id in 145 aa. (155 aa)
BP3199Similar to Sulfolobus solfataricus hypothetical protein SSO2626 TR:Q97VJ8 (EMBL:AE006858) (128 aa) fasta scores: E(): 3.4e-05, 28.15% id in 103 aa. (129 aa)
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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