STRINGSTRING
fabG-5 fabG-5 BP2555 BP2555 BP2556 BP2556 BP2557 BP2557 BP2558 BP2558 BP2559 BP2559
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fabG-5Similar to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 3.5e-29, 41.597% id in 238 aa. (248 aa)
BP2555Conserved hypothetical protein; Similarover the whole range to proteins of unproven function e.g. Archaeoglobus fulgidus MaoC protein af2313 TR:O27971 (EMBL:AE000944) (151 aa) fasta scores: E(): 1.3e-13, 40.000% id in 130 aa. Similar to the the very C-terminus of Escherichia coli phenylacetic acid degradation protein MaoC SW:MAOC_ECOLI (P77455) (681 aa) fasta scores: E(): 1.6e-08, 35.821% id in 134 aa. (147 aa)
BP2556Weakly similar to many proteins of undefined function e.g. Thermoplasma acidophilum hypothetical protein Ta1457 ta1457 TR:Q9HI85 (EMBL:AL445067) (135 aa) fasta scores: E(): 0.018, 25.210% id in 119 aa. (130 aa)
BP2557Conserved hypothetical protein; Similar to many e.g. Pseudomonas aeruginosa hypothetical protein Pa1016 TR:Q9I4V7 (EMBL:AE004534) (383 aa) fasta scores: E(): 2.6e-46, 43.669% id in 387 aa. (387 aa)
BP2558LysR-family transcriptional regulator; Similar to many e.g. Escherichia coli, and glycine cleavage system transcriptional activator GcvA or B2808 or Z4125 or Ecs3668 SW:GCVA_ECOLI (P32064) (305 aa) fasta scores: E(): 1.3e-22, 30.208% id in 288 aa; Belongs to the LysR transcriptional regulatory family. (295 aa)
BP2559Hypothetical protein; Similar to many e.g. Escherichia coli hypothetical protein YfdE or B2371 SW:YFDE_ECOLI (P76518) (381 aa) fasta scores: E(): 5.3e-53, 37.333% id in 375 aa; Belongs to the CoA-transferase III family. (395 aa)
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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