5 items (Bordetella pertussis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	wcbQ	Similar to Rhizobium meliloti capsular polysaccharide biosynthesis protein RkpI or R00574 or smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): 6e-45, 39.2% id in 500 aa. (518 aa)
	wcbP	Putative oxidoreductase; Similar to Myxococcus xanthus hypothetical oxidoreductase in uraA 5'region SW:YURA_MYXXA (P25970) (258 aa) fasta scores: E(): 1.4e-15, 39.35% id in 216 aa, and to Burkholderia mallei WcbP TR:Q9AI32 (EMBL:AF285636) (262 aa) fasta scores: E(): 2.1e-33, 44.26% id in 253 aa. (257 aa)
	BP1656	Transposase for IS481 element. (316 aa)
	BP2327	Similar to many eg. Escherichia coli outer-membrane protein YhbX precursor or b3173 SW:YHBX_ECOLI (P42640) (541 aa) fasta scores: E(): 4.4e-53, 36.45% id in 480 aa. (558 aa)
	BP3136	Putative sulfatase; Similar to Haemophilus influenzae hypothetical protein HI1246 SW:YC46_HAEIN (P44135) (647 aa) fasta scores: E(): 1.1e-113, 47.61% id in 628 aa. (653 aa)

Your Current Organism:

Bordetella pertussis

NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BP1656	wcbP	BP1656	BP1655	Transposase for IS481 element.	Putative oxidoreductase; Similar to Myxococcus xanthus hypothetical oxidoreductase in uraA 5'region SW:YURA_MYXXA (P25970) (258 aa) fasta scores: E(): 1.4e-15, 39.35% id in 216 aa, and to Burkholderia mallei WcbP TR:Q9AI32 (EMBL:AF285636) (262 aa) fasta scores: E(): 2.1e-33, 44.26% id in 253 aa.	0.598
BP1656	wcbQ	BP1656	BP1654	Transposase for IS481 element.	Similar to Rhizobium meliloti capsular polysaccharide biosynthesis protein RkpI or R00574 or smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): 6e-45, 39.2% id in 500 aa.	0.598
BP2327	BP3136	BP2327	BP3136	Similar to many eg. Escherichia coli outer-membrane protein YhbX precursor or b3173 SW:YHBX_ECOLI (P42640) (541 aa) fasta scores: E(): 4.4e-53, 36.45% id in 480 aa.	Putative sulfatase; Similar to Haemophilus influenzae hypothetical protein HI1246 SW:YC46_HAEIN (P44135) (647 aa) fasta scores: E(): 1.1e-113, 47.61% id in 628 aa.	0.665
BP2327	wcbQ	BP2327	BP1654	Similar to many eg. Escherichia coli outer-membrane protein YhbX precursor or b3173 SW:YHBX_ECOLI (P42640) (541 aa) fasta scores: E(): 4.4e-53, 36.45% id in 480 aa.	Similar to Rhizobium meliloti capsular polysaccharide biosynthesis protein RkpI or R00574 or smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): 6e-45, 39.2% id in 500 aa.	0.665
BP3136	BP2327	BP3136	BP2327	Putative sulfatase; Similar to Haemophilus influenzae hypothetical protein HI1246 SW:YC46_HAEIN (P44135) (647 aa) fasta scores: E(): 1.1e-113, 47.61% id in 628 aa.	Similar to many eg. Escherichia coli outer-membrane protein YhbX precursor or b3173 SW:YHBX_ECOLI (P42640) (541 aa) fasta scores: E(): 4.4e-53, 36.45% id in 480 aa.	0.665
BP3136	wcbQ	BP3136	BP1654	Putative sulfatase; Similar to Haemophilus influenzae hypothetical protein HI1246 SW:YC46_HAEIN (P44135) (647 aa) fasta scores: E(): 1.1e-113, 47.61% id in 628 aa.	Similar to Rhizobium meliloti capsular polysaccharide biosynthesis protein RkpI or R00574 or smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): 6e-45, 39.2% id in 500 aa.	0.741
wcbP	BP1656	BP1655	BP1656	Putative oxidoreductase; Similar to Myxococcus xanthus hypothetical oxidoreductase in uraA 5'region SW:YURA_MYXXA (P25970) (258 aa) fasta scores: E(): 1.4e-15, 39.35% id in 216 aa, and to Burkholderia mallei WcbP TR:Q9AI32 (EMBL:AF285636) (262 aa) fasta scores: E(): 2.1e-33, 44.26% id in 253 aa.	Transposase for IS481 element.	0.598
wcbP	wcbQ	BP1655	BP1654	Putative oxidoreductase; Similar to Myxococcus xanthus hypothetical oxidoreductase in uraA 5'region SW:YURA_MYXXA (P25970) (258 aa) fasta scores: E(): 1.4e-15, 39.35% id in 216 aa, and to Burkholderia mallei WcbP TR:Q9AI32 (EMBL:AF285636) (262 aa) fasta scores: E(): 2.1e-33, 44.26% id in 253 aa.	Similar to Rhizobium meliloti capsular polysaccharide biosynthesis protein RkpI or R00574 or smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): 6e-45, 39.2% id in 500 aa.	0.924
wcbQ	BP1656	BP1654	BP1656	Similar to Rhizobium meliloti capsular polysaccharide biosynthesis protein RkpI or R00574 or smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): 6e-45, 39.2% id in 500 aa.	Transposase for IS481 element.	0.598
wcbQ	BP2327	BP1654	BP2327	Similar to Rhizobium meliloti capsular polysaccharide biosynthesis protein RkpI or R00574 or smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): 6e-45, 39.2% id in 500 aa.	Similar to many eg. Escherichia coli outer-membrane protein YhbX precursor or b3173 SW:YHBX_ECOLI (P42640) (541 aa) fasta scores: E(): 4.4e-53, 36.45% id in 480 aa.	0.665
wcbQ	BP3136	BP1654	BP3136	Similar to Rhizobium meliloti capsular polysaccharide biosynthesis protein RkpI or R00574 or smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): 6e-45, 39.2% id in 500 aa.	Putative sulfatase; Similar to Haemophilus influenzae hypothetical protein HI1246 SW:YC46_HAEIN (P44135) (647 aa) fasta scores: E(): 1.1e-113, 47.61% id in 628 aa.	0.741
wcbQ	wcbP	BP1654	BP1655	Similar to Rhizobium meliloti capsular polysaccharide biosynthesis protein RkpI or R00574 or smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): 6e-45, 39.2% id in 500 aa.	Putative oxidoreductase; Similar to Myxococcus xanthus hypothetical oxidoreductase in uraA 5'region SW:YURA_MYXXA (P25970) (258 aa) fasta scores: E(): 1.4e-15, 39.35% id in 216 aa, and to Burkholderia mallei WcbP TR:Q9AI32 (EMBL:AF285636) (262 aa) fasta scores: E(): 2.1e-33, 44.26% id in 253 aa.	0.924