5 items (Bordetella pertussis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BP2852	Transposase for IS481 element. (316 aa)
	BP2853	Probable short chain dehydrogenase; Similar to several e.g. Streptomyces exfoliatus 20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992) (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa. (260 aa)
	BP2854	Probable short chain dehydrogenase; Similar to Bacillus subtilis glucose 1-dehydrogenase ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E(): 1.7e-26, 38.34% id in 253 aa. (249 aa)
	BP2855	Similar to many membrane transport proteins e.g. Escherichia coli alpha-ketoglutarate permease KgtP or WitA or B2587 SW:KGTP_ECOLI (P17448) (432 aa) fasta scores: E(): 1.3e-45, 34.81% id in 428 aa. (448 aa)
	BP2856	Conserved hypothetical protein; Similar to several proteins of unknown function e.g. Escherichia coli hypothetical 31.7 kDa protein SW:YPT2_ECOLI (Q99390) (286 aa) fasta scores: E(): 8.1e-15, 27.11% id in 284 aa. (309 aa)

Your Current Organism:

Bordetella pertussis

NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BP2852	BP2853	Transposase for IS481 element.	Probable short chain dehydrogenase; Similar to several e.g. Streptomyces exfoliatus 20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992) (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa.	0.449
BP2852	BP2854	Transposase for IS481 element.	Probable short chain dehydrogenase; Similar to Bacillus subtilis glucose 1-dehydrogenase ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E(): 1.7e-26, 38.34% id in 253 aa.	0.438
BP2853	BP2852	Probable short chain dehydrogenase; Similar to several e.g. Streptomyces exfoliatus 20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992) (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa.	Transposase for IS481 element.	0.449
BP2853	BP2854	Probable short chain dehydrogenase; Similar to several e.g. Streptomyces exfoliatus 20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992) (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa.	Probable short chain dehydrogenase; Similar to Bacillus subtilis glucose 1-dehydrogenase ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E(): 1.7e-26, 38.34% id in 253 aa.	0.810
BP2853	BP2855	Probable short chain dehydrogenase; Similar to several e.g. Streptomyces exfoliatus 20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992) (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa.	Similar to many membrane transport proteins e.g. Escherichia coli alpha-ketoglutarate permease KgtP or WitA or B2587 SW:KGTP_ECOLI (P17448) (432 aa) fasta scores: E(): 1.3e-45, 34.81% id in 428 aa.	0.689
BP2853	BP2856	Probable short chain dehydrogenase; Similar to several e.g. Streptomyces exfoliatus 20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992) (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa.	Conserved hypothetical protein; Similar to several proteins of unknown function e.g. Escherichia coli hypothetical 31.7 kDa protein SW:YPT2_ECOLI (Q99390) (286 aa) fasta scores: E(): 8.1e-15, 27.11% id in 284 aa.	0.702
BP2854	BP2852	Probable short chain dehydrogenase; Similar to Bacillus subtilis glucose 1-dehydrogenase ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E(): 1.7e-26, 38.34% id in 253 aa.	Transposase for IS481 element.	0.438
BP2854	BP2853	Probable short chain dehydrogenase; Similar to Bacillus subtilis glucose 1-dehydrogenase ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E(): 1.7e-26, 38.34% id in 253 aa.	Probable short chain dehydrogenase; Similar to several e.g. Streptomyces exfoliatus 20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992) (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa.	0.810
BP2854	BP2855	Probable short chain dehydrogenase; Similar to Bacillus subtilis glucose 1-dehydrogenase ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E(): 1.7e-26, 38.34% id in 253 aa.	Similar to many membrane transport proteins e.g. Escherichia coli alpha-ketoglutarate permease KgtP or WitA or B2587 SW:KGTP_ECOLI (P17448) (432 aa) fasta scores: E(): 1.3e-45, 34.81% id in 428 aa.	0.695
BP2854	BP2856	Probable short chain dehydrogenase; Similar to Bacillus subtilis glucose 1-dehydrogenase ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E(): 1.7e-26, 38.34% id in 253 aa.	Conserved hypothetical protein; Similar to several proteins of unknown function e.g. Escherichia coli hypothetical 31.7 kDa protein SW:YPT2_ECOLI (Q99390) (286 aa) fasta scores: E(): 8.1e-15, 27.11% id in 284 aa.	0.664
BP2855	BP2853	Similar to many membrane transport proteins e.g. Escherichia coli alpha-ketoglutarate permease KgtP or WitA or B2587 SW:KGTP_ECOLI (P17448) (432 aa) fasta scores: E(): 1.3e-45, 34.81% id in 428 aa.	Probable short chain dehydrogenase; Similar to several e.g. Streptomyces exfoliatus 20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992) (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa.	0.689
BP2855	BP2854	Similar to many membrane transport proteins e.g. Escherichia coli alpha-ketoglutarate permease KgtP or WitA or B2587 SW:KGTP_ECOLI (P17448) (432 aa) fasta scores: E(): 1.3e-45, 34.81% id in 428 aa.	Probable short chain dehydrogenase; Similar to Bacillus subtilis glucose 1-dehydrogenase ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E(): 1.7e-26, 38.34% id in 253 aa.	0.695
BP2855	BP2856	Similar to many membrane transport proteins e.g. Escherichia coli alpha-ketoglutarate permease KgtP or WitA or B2587 SW:KGTP_ECOLI (P17448) (432 aa) fasta scores: E(): 1.3e-45, 34.81% id in 428 aa.	Conserved hypothetical protein; Similar to several proteins of unknown function e.g. Escherichia coli hypothetical 31.7 kDa protein SW:YPT2_ECOLI (Q99390) (286 aa) fasta scores: E(): 8.1e-15, 27.11% id in 284 aa.	0.711
BP2856	BP2853	Conserved hypothetical protein; Similar to several proteins of unknown function e.g. Escherichia coli hypothetical 31.7 kDa protein SW:YPT2_ECOLI (Q99390) (286 aa) fasta scores: E(): 8.1e-15, 27.11% id in 284 aa.	Probable short chain dehydrogenase; Similar to several e.g. Streptomyces exfoliatus 20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992) (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa.	0.702
BP2856	BP2854	Conserved hypothetical protein; Similar to several proteins of unknown function e.g. Escherichia coli hypothetical 31.7 kDa protein SW:YPT2_ECOLI (Q99390) (286 aa) fasta scores: E(): 8.1e-15, 27.11% id in 284 aa.	Probable short chain dehydrogenase; Similar to Bacillus subtilis glucose 1-dehydrogenase ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E(): 1.7e-26, 38.34% id in 253 aa.	0.664
BP2856	BP2855	Conserved hypothetical protein; Similar to several proteins of unknown function e.g. Escherichia coli hypothetical 31.7 kDa protein SW:YPT2_ECOLI (Q99390) (286 aa) fasta scores: E(): 8.1e-15, 27.11% id in 284 aa.	Similar to many membrane transport proteins e.g. Escherichia coli alpha-ketoglutarate permease KgtP or WitA or B2587 SW:KGTP_ECOLI (P17448) (432 aa) fasta scores: E(): 1.3e-45, 34.81% id in 428 aa.	0.711