STRINGSTRING
metR metR lrp-2 lrp-2 BP2636 BP2636 BP2637 BP2637 lrp-3 lrp-3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
metRTranscriptional regulatory protein; Similar to Pseudomonas putida transcriptional activator MetR TR:Q9AF88 (EMBL:AF363278) (309 aa) fasta scores: E(): 4e-71, 56.863% id in 306 aa, and to Escherichia coli, and transcriptional activator protein MetR SW:METR_ECOLI (P19797) (317 aa) fasta scores: E(): 2.4e-46, 43.607% id in 305 aa; Belongs to the LysR transcriptional regulatory family. (309 aa)
lrp-2D-amino acid dehydrogenase small subunit (pseudogene); (GC)4 in pertussis; (GC)5 in parapertussis and bronchiseptica. (155 aa)
BP2636Putative exported protein; Weakly similar to many proteins of unknown function including: Neisseria meningitidis hypothetical protein Nmb0465 TR:Q9K0U6 (EMBL:AE002403) (233 aa) fasta scores: E(): 9.3e-06, 28.79% id in 191 aa and Rhizobium loti Mll0832 protein TR:Q98LX6 (EMBL:AP002995) (250 aa) fasta scores: E(): 0.00035, 25% id in 244 aa. (222 aa)
BP2637Putative lipoprotein; No significant database hits. (400 aa)
lrp-3Similar to Escherichia coli, leucine-responsive regulatory protein Lrp or AlsB or LivR or Ihb or OppI or B0889 or Z1234 or ECD0974 SW:LRP_ECOLI (P19494) (163 aa) fasta scores: E(): 3.6e-23, 44.23% id in 156 aa, and to Neisseria meningitidis putative AsnC-family transcriptional regulator NMA0756 TR:Q9JVP4 (EMBL:AL162754) (160 aa) fasta scores: E(): 4.1e-25, 46.15% id in 156 aa. (162 aa)
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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